SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50488

Length: 415 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50488
GGGTTCACTATATTGGTCTTAATGTATCGCAGAGCCGTATAGACCAATATAGTGAACCCAACTTGGTGGTTTACGGTTGCTTTTCACAATTGCAAGTTTCTGTACCCTTTCTGAATCAAACTTGCAATTGTGAAAAGCAACCGTACACTTGCAAGTTTGATTCAGAAAGGGTACAGAAACTAATTTCCATCATGGAGAACAAGATTGAAGATGCTTTTCTTATCGATCTTATATGCAGATTCTTTCGAGCTAATGTTTTGGCTATAGAGTTTGGAGGTTTTTTCCTTGGCCGCGGTTTCCCACAAGAAACTAACCTATGTTCTATTCTCATAAATATTTACTTTCATGGTTTTGATAAAGAGGTCAAGCATATGCGGCGCATCATTGATCAGACAAATCCAGTGACTAGGTATAG

Ace file of the UniGene sp_v2.0_unigene50488

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T609_RICCO	-	-	6.0e-21	56%
FL-Next	tr=RNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	56%
Blast2go	rna binding	-	-	1.16329e-21	62%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000442	-	0.0	-
Sma3	Reverse transcriptase	IPR000477	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T609

Fln msg: Distance to subject end: 477 aas, your sequence is shorter than subject: 137 - 751

Fln protein: VHYIGLNVSQSRIDQYSEPNLVVYGCFSQLQVSVPFLNQTCNCEKQPYTCKFDSERVQKLISIMENKIEDAFLIDLICRFFRANVLAIEFGGFFLGRGFPQETNLCSILINIYFHGFDKEVKHMRRIIDQTNPVTRY

Protein Length: 138

Fln nts: GGGTTCACTATATTGGTCTTAATGTATCGCAGAGCCGTATAGACCAATATAGTGAACCCAACTTGGTGGTTTACGGTTGCTTTTCACAATTGCAAGTTTCTGTACCCTTTCTGAATCAAACTTGCAATTGTGAAAAGCAACCGTACACTTGCAAGTTTGATTCAGAAAGGGTACAGAAACTAATTTCCATCATGGAGAACAAGATTGAAGATGCTTTTCTTATCGATCTTATATGCAGATTCTTTCGAGCTAATGTTTTGGCTATAGAGTTTGGAGGTTTTTTCCTTGGCCGCGGTTTCCCACAAGAAACTAACCTATGTTCTATTCTCATAAATATTTACTTTCATGGTTTTGATAAAGAGGTCAAGCATATGCGGCGCATCATTGATCAGACAAATCCAGTGACTAGGTATAG

Fln Alignment:

AllPineV4_c49497___KFDSERVQKLISIMENKIEDAFLIDLICRFFRANVLAIEFGGFFLGRGFPQETNLCSILINIYFHGFDKEVKHMRRIIDQTNP
B9T609_______________KFDSRNLDKLCLFIEEKINDGVLIDVIKRLFECGVLNIELGGFHLGKGLPQECGLCPILINIYFNGFDKEIQQIRLRISEQNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain