SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50453

Length: 456 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50453
CTTCCTGAGTCGATCGAGACCCTTCCCACCGTCTTCGTCATTCCTGATAGAATCACTGAAGCACGTCGACAACGTTCCGCTAGTGGTGATAGTTCACCATCATCATACCCCGTCGTTGCCCTTGGCGGCACTTTCGATCATTTACATGCAGGCCACAAGATTCTCCTTAGCATGGCAGCATGGATAGCTGGTAGCAAAGTCATCGTTGGTGTCACCGACGACGAGCTGCTGAAGAATAAATCGAATAAACATGTCCTGGAGCCAATAAACCTGCGCATGGAGAGAACTCGTTCTTTCCTCAAGCTCTTCCGCCCTGATCTTGAGTATGAAGTTGTACCAATACGGGACGTGTATGGCCCTACTGGTTGGGATCCCGATATTCAGGCGCTGATAGTTAGCATAGAGACTCTACCTGGAGCAGCAGCAATCGACAAGAAACGCGCCGCCAAGTCGTTA

Ace file of the UniGene sp_v2.0_unigene50453

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CTP_transf_2 domain containing protein	-	-	6.0e-09	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	ygr277c-like protein	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	coenzyme A biosynthetic process	GO:0015937	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	cytoplasm	GO:0005737	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Dephospho-CoA kinase	IPR001977	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYQ7

Fln msg: Distance to subject end: 62 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 152 - 194

Fln protein: LPESIETLPTVFVIPDRITEARRQRSASGDSSPSSYPVVALGGTFDHLHAGHKILLSMAAWIAGSKVIVGVTDDELLKNKSNKHVLEPINLRMERTRSFLKLFRPDLEYEVVPIRDVYGPTGWDPDIQALIVSIETLPGAAAIDKKRAAKSL

Protein Length: 153

Fln nts: CTTCCTGAGTCGATCGAGACCCTTCCCACCGTCTTCGTCATTCCTGATAGAATCACTGAAGCACGTCGACAACGTTCCGCTAGTGGTGATAGTTCACCATCATCATACCCCGTCGTTGCCCTTGGCGGCACTTTCGATCATTTACATGCAGGCCACAAGATTCTCCTTAGCATGGCAGCATGGATAGCTGGTAGCAAAGTCATCGTTGGTGTCACCGACGACGAGCTGCTGAAGAATAAATCGAATAAACATGTCCTGGAGCCAATAAACCTGCGCATGGAGAGAACTCGTTCTTTCCTCAAGCTCTTCCGCCCTGATCTTGAGTATGAAGTTGTACCAATACGGGACGTGTATGGCCCTACTGGTTGGGATCCCGATATTCAGGCGCTGATAGTTAGCATAGAGACTCTACCTGGAGCAGCAGCAATCGACAAGAAACGCGCCGCCAAGTCGTTA

Fln Alignment:

AllPineV4_c49457___YPVVALGGTFDHLHAGHKILLSMAAWIAGSKVIVGVTDDELLKNKSNKHVLEPINLRMERTRSFLKLFRPDLEYEVVPIRDVYGPTGWDPDIQALIVSIETLPGAAAIDKKRAAKSL
A9NYQ7_______________YDAVVLGGTFDRLHDGHRRLLKAAAELARVRVVVGVCTGPMLENKELAHLIEPVEKRIKAIENYIKSIKPGLVVQAEPITDPYGPSIVDEDLEAIVVSKETLAGGLSVNKRRAERGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain