SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50354

Length: 357 nt

UniGene Fasta

>sp_v2.0_unigene50354
CGTCGTGACCTTGGCTGTCACTCAGTTTTTTGGCTTGCAAATTGGCCCTGTTTGGATGGAAGGACAGGCAGAGCCCAATGCCTAAGTGGAGAGGTGCATTGATGTGGTTCGCTCGGATTGCGGCTCGTTGGATTCTCTTCTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCCAGAAGAATTGCACCAATAGTTGTATGCAACCATATCTCATATACAGATCCATTATTCTTCTTTTATGAGCTGTTTCCTAGTATTGTTGCGTCAGAAAGTCATGACAAGATCCCAGTTGTAGGGACAATTATAAGGACTACCCAGGTCATTTATGTAGATAGATCCTCATCAG

Ace file of the UniGene sp_v2.0_unigene50354

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase [Arabidopsis thaliana] gb\|AAM14898.1\| unknown protein; alternative splicing isoform [Arabidopsis thaliana] dbj\|BAD44223.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10584.1\| lysophosp	-	-	6.0e-39	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	lysophosphatidylcholine acyltransferase lyso-paf acetyltransferase	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ53

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 156 aas, your sequence is shorter than subject: 118 - 472

Fln protein: S*PWLSLSFLACKLALFGWKDRQSPMPKWRGALMWFARIAARWILFCFGYHWIRRIGKPASRRIAPIVVCNHISYTDPLFFFYELFPSIVASESHDKIPVVGTIIRTTQVIYVDRSSS

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTTGGCTTGCAAATTGGCCCTGTTTGGATGGAAGGACAGGCAGAGCCCAATGCCTAAGTGGAGAGGTGCATTGATGTGGTTCGCTCGGATTGCGGCTCGTTGGATTCTCTTCTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCCAGAAGAATTGCACCAATAGTTGTATGCAACCATATCTCATATACAGATCCATTATTCTTCTTTTATGAGCTGTTTCCTAGTATTGTTGCGTCAGAAAGTCATGACAAGATCCCAGTTGTAGGGACAATTATAAGGACTACCCAGGTCATTTATGTAGATAGATCCTCATCAG

Fln Alignment:

AllPineV4_c49324___FLACKLA-LFGWKDRQSPMPKW-------RGALMWFARIAARWILFCFGYHWI---RRIGKPASRRIAPI---------------------VVCNHISYTDPLFFFYELFPSIVASESHDKIPVVGTIIRTTQVIYVDRSS
B8LQ53_______________YLICRLCTLFSAPNREDDQEDYAHMSGVRRTIIVLSGRFLSRALFFTLGFYWITETRRIPDPATQSQDGLCAKEVRENEGEAEDSSYQPGAIVSNHISYLDILYHMSASFPSFVAKRSVARLPLVGLISKCLGCVYVQRES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain