SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50306

Length: 397 nt

UniGene Fasta

>sp_v2.0_unigene50306
CTTTTCTCTTATCACAAAACTTTGAAAGATGTAAGTCTGATCCGAATGTGTACATGCTTAGGGCACATGATTCTCTTCTTATCTTAGTTTTGTATGTAGATGATCTCCTAATCACTGGCAGCTCAGCTTCAGCCATTGCTACAGTCAAGAGGGCCTTGCATGATAGGTTCTTGATGACGGACATGGGTCCATTACAGTTCTTTCTTGGTCTTGAGATTAGCCAGGATGCCACAGGCATCAAACTCTCTCAGGCTAAGTATGCACGGGATCTCCTCGAGAGATTTCGCATGACTGACTGCAAGCCAGCACCGACTCCTTTTCTGTCTGGGGTCCGCCTTGAGGATGGAGGTGACACTCCATTAGTTGACAGCACTCTCTACCGACAGCTAGGTGGGGA

Ace file of the UniGene sp_v2.0_unigene50306

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein, putative [Solanum demissum]	-	-	3.0e-16	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	uncharacterized protein loc100811625	-	-	2.82222e-19	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Integrase, catalytic core	IPR001584	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 131 - 363

Fln protein: FLLSQNFERCKSDPNVYMLRAHDSLLILVLYVDDLLITGSSASAIATVKRALHDRFLMTDMGPLQFFLGLEISQDATGIKLSQAKYARDLLERFRMTDCKPAPTPFLSGVRLEDGGDTPLVDSTLYRQLGG

Protein Length: 132

Fln nts: CTTTTCTCTTATCACAAAACTTTGAAAGATGTAAGTCTGATCCGAATGTGTACATGCTTAGGGCACATGATTCTCTTCTTATCTTAGTTTTGTATGTAGATGATCTCCTAATCACTGGCAGCTCAGCTTCAGCCATTGCTACAGTCAAGAGGGCCTTGCATGATAGGTTCTTGATGACGGACATGGGTCCATTACAGTTCTTTCTTGGTCTTGAGATTAGCCAGGATGCCACAGGCATCAAACTCTCTCAGGCTAAGTATGCACGGGATCTCCTCGAGAGATTTCGCATGACTGACTGCAAGCCAGCACCGACTCCTTTTCTGTCTGGGGTCCGCCTTGAGGATGGAGGTGACACTCCATTAGTTGACAGCACTCTCTACCGACAGCTAGGTGGGGA

Fln Alignment:

AllPineV4_c49270___FLLSQNFERCKSDPNVYMLRAHDSXXXXXXXXXXXXXTGSSASAIATVKRALHDRFLMTDMGPLQFFLGLEISQDATGIKLSQAKYARDLLERFRMTDCKPAPTPFLSGVRLEDGGDTPLVDSTLYRQLGG
B8LKV8_______________YMIKNEFIRSTSEPTLYT-KVNEQGQILIVCLYVDDLIYTGNLTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain