SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50282

Length: 452 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene50282
CGTCGTGACCTTGGCTGTCACCCAGAGTGAGAGTGGAAGCGAAGGTTCGAGTGAAAGATGTGATGACAGTTCACAAAATGATTCCCACACCGAACAGAAGATCAGCTTTGGGCAAGGTTGTATGGAATCTACCATGGTGCACACGGTGAATACAACTCACTCACAAGTTCGTAGTGGACATGCCGTATCTGGGGGCACAGCAACAAATACGAGTGTGAACCAAGCCATTGCAGCTGTACCAACTTCTGTTACAGGCAATTCCACTGCAGTTACAGGGCTGACAATCAACTTAAATATTGGCATGGAGTACTGGACTATGTCGGCTCCAACACCAATTTCTGCTATATGTGGGAGACATCCTGGTGCTCCATTGACACCAGGGTCGGTTTCTTCTGCCCTGAACATGTCACTTATTGAACATCCTGATAGTCTTCCTACAGAACTTTGGCTAC

Ace file of the UniGene sp_v2.0_unigene50282 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bZIP DNA-binding protein [Petroselinum crispum]	-	-	2.0e-08	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	transcription factor hbp-1a	-	-	1.01067e-14	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB03

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 150 - 301

Fln protein: VVTLAVTQSESGSEGSSERCDDSSQNDSHTEQKISFGQGCMESTMVHTVNTTHSQVRSGHAVSGGTATNTSVNQAIAAVPTSVTGNSTAVTGLTINLNIGMEYWTMSAPTPISAICGRHPGAPLTPGSVSSALNMSLIEHPDSLPTELWL

Protein Length: 151

Fln nts: CGTCGTGACCTTGGCTGTCACCCAGAGTGAGAGTGGAAGCGAAGGTTCGAGTGAAAGATGTGATGACAGTTCACAAAATGATTCCCACACCGAACAGAAGATCAGCTTTGGGCAAGGTTGTATGGAATCTACCATGGTGCACACGGTGAATACAACTCACTCACAAGTTCGTAGTGGACATGCCGTATCTGGGGGCACAGCAACAAATACGAGTGTGAACCAAGCCATTGCAGCTGTACCAACTTCTGTTACAGGCAATTCCACTGCAGTTACAGGGCTGACAATCAACTTAAATATTGGCATGGAGTACTGGACTATGTCGGCTCCAACACCAATTTCTGCTATATGTGGGAGACATCCTGGTGCTCCATTGACACCAGGGTCGGTTTCTTCTGCCCTGAACATGTCACTTATTGAACATCCTGATAGTCTTCCTACAGAACTTTGGCTAC

Fln Alignment:

AllPineV4_c49244___DDSSQNDSHTEQKISFGQGCMESTMVHTVNTT--HSQVRSGHAVSGGTATNTSVNQAIAAVPTSVTGNSTAVTGLTINLNIGMEYWTMSAPTPISAICGRHPGAPLTPGSVSSALNM
D5AB03_______________DGNSPNGSHSGQKTRFEQGSTEADEAQNGHATSYNGQSANTNSASGSQVTTMNSSPTMAAVAMSLPVTSGTVTGPMTNLNIGMDYWCVAAPTPLSSMRGQLPVSSTTAAIIPSAQNM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain