SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50255

Length: 322 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene50255
GTGGAGCATCGAGCAGTAACAAATATGTACAGTGCACGCATATCAGTTCCCACTTTCTATTTCCCTTCAGACGATGCTTTTATTGCTCCTGCAACAAGCATGGTGAATGAACAGCAGCCGGCTGTTTACCGAGGATACAAGTTTGAAGAGTTTTTGGGTGCTTTCTGGAACCAGGAGCTAAAGGGAAACAGTGTGCTGAATCGTTTCAGCATCTAATGGACGATGATTCCTGTTCGATGGTGGAGCAATAAATAATTTGAATAGAGATCACTATGCGTCCCACCATAAATAATTTGAATAGACATTTGCCTTTGCATTTGGT

Ace file of the UniGene sp_v2.0_unigene50255 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03425.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=297.8, E=1.3e-85, N=1) [Arabidopsis thaliana] emb\|CAB40043.1\| putative Fe(II)/a	-	-	5.0e-12	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	2og-fe oxygenase family protein	-	-	1.12103e-33	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQK0

Fln msg: your sequence is shorter than subject: 72 - 312

Fln protein: VEHRAVTNMYSARISVPTFYFPSDDAFIAPATSMVNEQQPAVYRGYKFEEFLGAFWNQELKGNSVLNRFSI*

Protein Length: 73

Fln nts: GTGGAGCATCGAGCAGTAACAAATATGTACAGTGCACGCATATCAGTTCCCACTTTCTATTTCCCTTCAGACGATGCTTTTATTGCTCCTGCAACAAGCATGGTGAATGAACAGCAGCCGGCTGTTTACCGAGGATACAAGTTTGAAGAGTTTTTGGGTGCTTTCTGGAACCAGGAGCTAAAGGGAAACAGTGTGCTGAATCGTTTCAGCATCTAA___TGGACGATGATTCCTGTTCGATGGTGGAGCAATAAATAATTTGAATAGAGATCACTATGCGTCCCACCATAAATAATTTGAATAGACATTTGCCTTTGCATTTGGT

Fln Alignment:

AllPineV4_c49214___VEHRAVTNMYSARISVPTFYFPSDDAFIAPATSMVNEQQPAVYRGYKFEEFLGAFWNQELKGNSVLNRFSI
A9NQK0_______________VEHRAVTNIYTARISIPTFYLPGDDAFIAPASSMVDEQQPALYRGYKFEEFLGAFWRQGLKGKSVLDRFMI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain