SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50105

Length: 326 nt

UniGene Fasta

>sp_v2.0_unigene50105
GATGCTGACATCAGAGGGCGTTTGCAAAGTTTCTACGCTGACCCGGTTGTATTCAAGATGGACGGCTCGGTACGCGACAACAGTGTGATGTTGGGAAGCTCTTCGTCGTTTCCAATGTACGACAACGACTTTGGATGGGGAAGACCGGTGGGTGCAAGGAGTGGGTGGGCCAACAAGTTTGATGGAAAGGTATCTGCGTATCCTGCTAGAGTAGCCGGAGGTGTAGATTTAGAGATTTGTCTCCTGCCTCCTTTCATGGCCGCCCTGGATACTGATCCACAGTTTCTGTCCCTATTTGTAATTAGCAGGCTATTTAAGCTGATGAA

Ace file of the UniGene sp_v2.0_unigene50105

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HXXXD-type acyl-transferase-like protein [Arabidopsis thaliana] emb\|CAB69849.1\| anthranilate N-benzoyltransferase-like protein [Arabidopsis thaliana] gb\|AAL08268.1\| AT5g01210/F7J8_190 [Arabidopsis thaliana] gb\|AAL90982.1\| AT5g01210/F7J8_190 [Arabidopsis t	-	-	1.0e-19	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	transferase family protein	-	-	2.54224e-41	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to karrikin	GO:0080167	Biological Process	2.54224e-41	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS40

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 108 - 440

Fln protein: DADIRGRLQSFYADPVVFKMDGSVRDNSVMLGSSSSFPMYDNDFGWGRPVGARSGWANKFDGKVSAYPARVAGGVDLEICLLPPFMAALDTDPQFLSLFVISRLFKLM

Protein Length: 109

Fln nts: GATGCTGACATCAGAGGGCGTTTGCAAAGTTTCTACGCTGACCCGGTTGTATTCAAGATGGACGGCTCGGTACGCGACAACAGTGTGATGTTGGGAAGCTCTTCGTCGTTTCCAATGTACGACAACGACTTTGGATGGGGAAGACCGGTGGGTGCAAGGAGTGGGTGGGCCAACAAGTTTGATGGAAAGGTATCTGCGTATCCTGCTAGAGTAGCCGGAGGTGTAGATTTAGAGATTTGTCTCCTGCCTCCTTTCATGGCCGCCCTGGATACTGATCCACAGTTTCTGTCCCTATTTGTAATTAGCAGGCTATTTAAGCTGATGAA

Fln Alignment:

AllPineV4_c49027___DADIRGRLQSFYADPVVFKMDGSVRDNSVMLGSSSSFPMYDNDFGWGRPVGARSGWANKFDGKVSAYPARV-AGGVDLEICLLPPFMAALDTDPQFL
B8LS40_______________DGNIRAELQKYKQRPTVVKLDRTIRDNSVMMGSSPRFPMYDNDFGWGRPVGVRSGWANKFDGKMSAYPEREGGGGVDVEICLMPAFMAAMETDPQFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain