SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49988

Length: 175 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene49988
GAGGAGAACGAGGGGGGGAGATTGCTCCCCAAATGCCACCACAGTTTTCACATCGACTGCATCGACATGTGGTTCCATTCGCACTCGACTTGCCCTCTGTGTCGAGCCAGCGCACAGCCCGATATACCCGCGGCCGATTCCGTCGTGATCCGAGTAGCCGACGAGGCGGCCGCGT

Ace file of the UniGene sp_v2.0_unigene49988

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RT88_RICCO	-	-	1.0e-14	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	ring finger	-	-	7.22703e-24	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	7.22703e-24	80%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWQ5

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 58 - 321

Fln protein: EENEGGRLLPKCHHSFHIDCIDMWFHSHSTCPLCRASAQPDIPAADSVVIRVADEAAA

Protein Length: 59

Fln nts: GAGGAGAACGAGGGGGGGAGATTGCTCCCCAAATGCCACCACAGTTTTCACATCGACTGCATCGACATGTGGTTCCATTCGCACTCGACTTGCCCTCTGTGTCGAGCCAGCGCACAGCCCGATATACCCGCGGCCGATTCCGTCGTGATCCGAGTAGCCGACGAGGCGGCCGCGT

Fln Alignment:

AllPineV4_c48892___EENEGGRLLPKCHHSFHIDCIDMWFHSHSTCPLCRASAQPDIPAADSVVIRVADEAAA
A9NWQ5_______________ESNEKGRLLPKCNHSFHIECIDMWFQSHSTCPLCRASAQPDTP-ADSVVI-VVEEAAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain