SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49971

Length: 1486 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene49971

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tify multi-domain protein	-	-	7.0e-10	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	jasmonate zim-domain protein 1	-	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRV6

Fln msg:

Fln protein: MSTSASAALEFLRVQSASETNGTAVNGSNSLESCPGKQFAKPRLMQDLSRIRPQMMQKVLSSIALSEDKKTDFIHVNREAESLNGKSEAPSQAELIELFPLSTGRFSSNPRVPETNITLPFATGQTDPDSRSAPAKATEQPSTAQLTIFYNGAVNVYDLPADKAQAIMSLASSDSSINTGTSPTTSSKTEQMSESLPSKSQPKAVNENQTQRPPIGLEIVRKLSLQRFLQKRKERINNVAPYTTMKPATLQSKEGKDSADQIFLSLAGPQQPF*

Protein Length: 275

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTAGCTTGAGAACGGCAATGTCCACATGCGGAATATACACCTGTAACTTGCGAAGCAGCGTCTTCTGGTCACCGATTCCATTATTTATCTTCTTCTTGGCCTTGGCTGTCGAAAAATTCTCTACATATATTGGGCTCTTTGATTGATATCCGGGAGTAGCAAAGCTTTAAGAACAGGTAGAAGCTTGAAGAAAATTAGGGATTTATAGGAATATTTTGTAAGCA_-_ATGTCGACAAGTGCATCTGCGGCTTTGGAGTTTCTGCGCGTTCAGAGCGCCTCTGAAACTAATGGAACGGCTGTGAATGGAAGTAACAGTTTGGAATCATGCCCTGGAAAACAATTCGCCAAGCCGAGATTAATGCAAGATCTGTCGCGGATTAGACCGCAAATGATGCAAAAGGTGCTTTCATCAATCGCGCTTTCAGAGGACAAGAAGACCGATTTCATTCATGTCAACCGTGAGGCCGAGAGCTTAAACGGAAAATCTGAGGCACCGAGTCAAGCGGAATTGATAGAATTGTTTCCACTAAGCACTGGCCGTTTCAGTTCAAACCCTAGAGTTCCGGAAACAAATATAACCTTGCCTTTTGCAACCGGTCAAACGGATCCGGATTCGAGATCTGCTCCAGCAAAAGCTACGGAGCAACCGTCCACAGCTCAACTCACTATTTTCTATAACGGAGCGGTGAATGTTTACGATTTGCCAGCTGACAAGGCCCAAGCCATTATGAGTCTTGCTAGCTCTGATAGCTCGATCAACACAGGAACATCTCCGACTACCAGCAGTAAAACCGAGCAGATGTCAGAATCGCTGCCTTCAAAGTCTCAGCCAAAAGCTGTCAACGAAAATCAAACTCAAAGGCCTCCAATAGGCCTGGAAATAGTCAGGAAATTATCTCTGCAACGCTTCCTCCAGAAGCGCAAGGAAAGAATCAACAACGTGGCTCCTTACACCACGATGAAGCCGGCGACATTGCAGTCGAAAGAAGGGAAGGATTCGGCAGACCAGATATTCCTTTCGTTGGCGGGGCCACAGCAACCATTTTAA___AATGTCGGTGGATGCTCTCGACTTTATTAAATTTATCACGCTGCAATTCTTTTATACCTAAGTGGACTGGAACGGAGCAACGCGTCTTCCGGATTCCCACTTCATGACACGTGATAGTCGTGGGCGGCAGGCAAAAGTGCAACTGGCCCCAATAGTCAGTTTTGTCTCCACATTGATAGCGTGAAGCTACATAGCAATTTCTGGAGTGGGCAGCCTTCATTCTGCACCACAAACATTATTCGTATGATTTTTTAATTGATTGATGACCAATTTTGTTCGTACACCATATGGTTTTAGTTTGAATATTTATTGAAATCATGGAATTGTAAAACGACAAAGTTACAAAATCTTTATATTTTAAGCATTGAGTACTTTATTGTGGAGTGGAGTCTATAATGTAACTTATACATTTA

Fln Alignment:

AllPineV4_c48868___LEFLRVQSASETNGTAVNGSNSLESCPGKQFAKPR-LMQDLSRIRPQMMQKVLSSIALSEDKKTDFIHVNREAESLNGKSEAPSQAELIELFPLSTGRFSSNPRVPETNITLPFATGQTDPDSRSAPAKATEQPSTAQLTIFYNGAVNVYDLPADKAQAIMSLASSDSSINTGTSPTTSSKTEQMSESL----PSKSQPKAVNENQTQRPPIGLEIVRKLSLQRFLQKRKERINNVAPYTTMKPATLQSKEGKDSADQIFLSLAGPQQPF
C0PRV6_______________LEFLRFQNASEANGTVVNGCTSLEFCPGKQLAKPRSVMPDLSRIRPQMMQKVLSSIGLSEDKK---------AKSFNGQSEASSHTELMELFPVSTG-FGSNPRVAETNITLPFATGQTDPDSRSVPAKAPEQSSTAQLTIFYNGAVHVYDVPAEKAQAIMSFASSNSSINTGTSPTTSSQIEQISKPFPSKPPSKPQSNAVNEKQTHRPPIGLEIVRKLSLQRFLQKRKERINNVAPYSSMKTATLPSKVEKDTADQIFLSLAGPTQHF

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
145			16	66	0.988813
148	16			83	0.994513
202	88		11		0.923834
212	69	30			1.0
215	69		30		1.0
217		30	69		1.0
223	69	30			1.0
224	69			30	1.0
226	69			30	1.0
227	69	30			1.0
229	69	30			1.0
233	23		7	69	1.0
319	86		13		0.999973
349	85			14	0.999981
584		82		17	1.0
763			12	87	0.999964
893		83		16	0.999991
1053	10	90			0.90298
1166	90			10	0.999898
1233		8	91		0.999807
1261		9	90		0.999842
1359	10	89			0.999919
1424	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain