SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49960

Length: 208 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene49960
CGTCGTGACCTTGGCTGTCACTCATATTACGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGCAAAGTTCCTCGTGTTGGGTGGCAGATTGATCCCTTCGGACATTCTGCCGTTCAAGGTTATCTTCTAAGTGCAGAGGTTGGATTTTGAAGCATTGTTCTTTGCGAGGGCTGACTATCAAGAC

Ace file of the UniGene sp_v2.0_unigene49960

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha-mannosidase [Arabidopsis thaliana] emb\|CAA66821.1\| alpha-mannosidase [Arabidopsis thaliana] emb\|CAA72432.1\| alpha-mannosidase precursor [Arabidopsis thaliana] dbj\|BAB01735.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AAK62592.1\| AT3g26720/MLJ15_12	-	-	4.0e-20	80%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	83%
Blast2go	lysosomal alpha-	-	-	1.14215e-22	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	1.14215e-22	91%

Source	KEGGs	Term	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	1.14215e-22	91%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.14215e-22	91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	1.14215e-22	91%
Blast2go	Glycosaminoglycan degradation	00531	1.14215e-22	91%
Blast2go	Metabolic pathways	01100	1.14215e-22	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	1.14215e-22	91%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.14215e-22	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.14215e-22	91%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F2DJN8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 817 aas, your sequence is shorter than subject: 58 - 1010

Fln protein: RRDLGCHSYYVDMIDQTTLGHRFIKKEFGKVPRVGWQIDPFGHSAVQGYLLSAEVGF*

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTACGTGGACATGATAGATCAAACAACCCTTGGGCACCGATTTATCAAGAAAGAGTTTGGCAAAGTTCCTCGTGTTGGGTGGCAGATTGATCCCTTCGGACATTCTGCCGTTCAAGGTTATCTTCTAAGTGCAGAGGTTGGATTTTGAAGCATTGTTCTTTGCGAGGGCTGACTATCAAGAC

Fln Alignment:

AllPineV4_c48851___YYVDMIDQTTLGHRFIKKEFGKVPRVGWQIDPFGHSAVQGYLLSAEVGF
F2DJN8_______________HYIDMIDQTTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
166			66	33	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain