SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49936

Length: 213 nt

UniGene Fasta

>sp_v2.0_unigene49936
GCGGTGGTTACTGCTCTTTATGAGTGCCAGAAAGCAATGGGAACAGGTTACCTTTCAGCCTTTCCCTCTGAGTTCTTTGATCGTTTTGAAGCCATCCAACCTGTTTGGGCGCCATATTATACTATTCACAAGATCATGGCAGGATTGCTAGATCAATTTGAGTTCGCTGGAAATGCTCAAGCGTTTAATATGACAGAGTGGATGGCTGAGTAC

Ace file of the UniGene sp_v2.0_unigene49936

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB88259.1\| putative protein [Arabidopsis thaliana] dbj\|BAC42665.1\| unknown protein [Arabidopsis thaliana] gb\|AED91834.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	9.0e-24	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%
Blast2go	uncharacterized protein	-	-	2.42428e-30	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	2.42428e-30	81%
Blast2go	vacuole	GO:0005773	Cellular Component	2.42428e-30	81%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Metridin-like ShK toxin	IPR003582	-	-
Sma3	Protein of unknown function DUF1680	IPR012878	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GU88

Fln msg: Distance to subject end: 598 aas, your sequence is shorter than subject: 71 - 864

Fln protein: AVVTALYECQKAMGTGYLSAFPSEFFDRFEAIQPVWAPYYTIHKIMAGLLDQFEFAGNAQAFNMTEWMAEY

Protein Length: 72

Fln nts: GCGGTGGTTACTGCTCTTTATGAGTGCCAGAAAGCAATGGGAACAGGTTACCTTTCAGCCTTTCCCTCTGAGTTCTTTGATCGTTTTGAAGCCATCCAACCTGTTTGGGCGCCATATTATACTATTCACAAGATCATGGCAGGATTGCTAGATCAATTTGAGTTCGCTGGAAATGCTCAAGCGTTTAATATGACAGAGTGGATGGCTGAGTAC

Fln Alignment:

AllPineV4_c48821___AVVTALYECQKAMGTGYLSAFPSEFFDRFEAIQPVWAPYYTIHKIMAGLLDQFEFAGNAQAFNMTEWMAEY
F6GU88_______________AVVSALATCQEKMGTGYLSAFPSELFDRFEAIKPVWAPYYTIHKILAGLLDQYTFAGNSQALKMMTWMVEH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain