SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49860

Length: 315 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene49860
TGGGAGTCTTCATCTTCCAGAAGGGATGGAGCTATTGATTCCAGTCTTGGCCATTCACCATGATGAAAAGTTATGGGGAGATGATGCGAACGAATTCAATCCCGCAAGATTTAGTTCCGGAGATGCAAGTGGTGCAAAACATCCATTGGCATATATTCCGTTTGGCATTGGGCCGAGGGCCTGCATAGGGCGAAATTTCAGTGTGATTGAGGCCAAGGTTGTTTTGACAATGATTTTACAGCGATTCTCTTTCGAGATTTCTCCTTCATACAGACATGCACCCACTGTTCTCATGATGCTCTACCCTGAGTATGG

Ace file of the UniGene sp_v2.0_unigene49860 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450 enzyme [Pisum sativum]	-	-	4.0e-37	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	cytochrome p450	-	-	9.80909e-45	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 104 - 517

Fln protein: GSLHLPEGMELLIPVLAIHHDEKLWGDDANEFNPARFSSGDASGAKHPLAYIPFGIGPRACIGRNFSVIEAKVVLTMILQRFSFEISPSYRHAPTVLMMLYPEY

Protein Length: 105

Fln nts: TGGGAGTCTTCATCTTCCAGAAGGGATGGAGCTATTGATTCCAGTCTTGGCCATTCACCATGATGAAAAGTTATGGGGAGATGATGCGAACGAATTCAATCCCGCAAGATTTAGTTCCGGAGATGCAAGTGGTGCAAAACATCCATTGGCATATATTCCGTTTGGCATTGGGCCGAGGGCCTGCATAGGGCGAAATTTCAGTGTGATTGAGGCCAAGGTTGTTTTGACAATGATTTTACAGCGATTCTCTTTCGAGATTTCTCCTTCATACAGACATGCACCCACTGTTCTCATGATGCTCTACCCTGAGTATGG

Fln Alignment:

AllPineV4_c48734___GSLHLPEGMELLIPVLAIHHDEKLWGDDANEFNPARFSSGDASGAKHPLAYIPFGIGPRACIGRNFSVIEAKVVLTMILQRFSFEISPSYRHAPTVLMMLYPEY
A9NWW9_______________GRLSIPAGTQLLLPILAIHHDQCLWGNDANEFNPARFSEGIAKAVKHPLAFMPFGFGPRICVGQNFALLEAKVVLAMILQRFSFVTSPSYAHAPVMVVTVRPQH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain