SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49797

Length: 338 nt

UniGene Fasta

>sp_v2.0_unigene49797
GATTCTTCAGCTGGGTACCGGGGAGGCAATCAGGTGGCCTGCAGGCTTACAGGTAATTTGTCCCCGTTTGTTGGAAATTTGACAGAGTTGCGCATTTTATCGCTGCCTTATAATGCAATCTCTGGAGAGATTCCAAGAGAGATCGCAAAAACTAAGGGCTCTGGAAATACTTGAACTTCAGGACAATTCTTTTACTGGCCAAATTCTGTCAGAATTAAAGGACTTGAGTTCCTTACGCGTGCTCAACCTTGGGTATAATTCTCTTACTGGAAGCATTCCTACGGAGCTTGGCAGATGTCACAAATTACAAATATTAAATCTAGCAGGAAACATGCTAA

Ace file of the UniGene sp_v2.0_unigene49797

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase RPK2 [Arabidopsis thaliana] sp\|Q9S7I6.1\|RPK2_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase RPK2; AltName: Full=Protein TOADSTOOL 2; AltName: Full=Receptor-like protein kinase 2; Fla	-	-	6.0e-14	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	lrr receptor-like serine threonine-protein kinase rpk2-like	-	-	1.52218e-17	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	radial axis specification	GO:0009945	Biological Process	1.52218e-17	64%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	1.52218e-17	64%
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.52218e-17	64%
Blast2go	response to cold	GO:0009409	Biological Process	1.52218e-17	64%
Blast2go	protein homooligomerization	GO:0051260	Biological Process	1.52218e-17	64%
Blast2go	embryonic meristem development	GO:0048508	Biological Process	1.52218e-17	64%
Blast2go	meristem maintenance	GO:0010073	Biological Process	1.52218e-17	64%
Blast2go	lignin metabolic process	GO:0009808	Biological Process	1.52218e-17	64%
Blast2go	pollen maturation	GO:0010152	Biological Process	1.52218e-17	64%
Blast2go	anther development	GO:0048653	Biological Process	1.52218e-17	64%
Blast2go	pollen germination	GO:0009846	Biological Process	1.52218e-17	64%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.52218e-17	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.52218e-17	64%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 576 aas, your sequence is shorter than subject: 113 - 818

Fln protein: DSSAGYRGGNQVACRLTGNLSPFVGNLTELRILSLPYNAISGEIPRExxxKLRALEILELQDNSFTGQILSELKDLSSLRVLNLGYNSLTGSIPTELGRCHKLQILNLAGNML

Protein Length: 114

Fln nts: GATTCTTCAGCTGGGTACCGGGGAGGCAATCAGGTGGCCTGCAGGCTTACAGGTAATTTGTCCCCGTTTGTTGGAAATTTGACAGAGTTGCGCATTTTATCGCTGCCTTATAATGCAATCTCTGGAGAGATTCCAAGAGAGATxxxxxxAAAACTAAGGGCTCTGGAAATACTTGAACTTCAGGACAATTCTTTTACTGGCCAAATTCTGTCAGAATTAAAGGACTTGAGTTCCTTACGCGTGCTCAACCTTGGGTATAATTCTCTTACTGGAAGCATTCCTACGGAGCTTGGCAGATGTCACAAATTACAAATATTAAATCTAGCAGGAAACATGCTAA

Fln Alignment:

AllPineV4_c48655___LTGNLSPFVGNLTELRILSLPYNAISGEIPREIxxKLRALEILELQDNSFTGQILSELKDLSSLRVLNLGYNSLTGSIPTELGRCHKLQILNLAGNML
B8LQX6_______________LTGTIPPEFGQLKSLGILDLRFNFLRGFIPKALxxQLKSLGILDLRFNFLRGFIPKALCNCTRLQWIRLSYNSLTGSIPTEFGRLVKLEQLRLRNNNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain