SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49582

Length: 687 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene49582 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase theta subunit [Arabidopsis thaliana] dbj\|BAD93700.1\| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gb\|AEE86105.1\| DNA polymerase theta subunit [Arabidopsis thaliana]	-	-	7.0e-09	54%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	70%
Blast2go	DNA polymerase theta subunit	-	-	2.55406e-11	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	2.55406e-11	83%
Blast2go	regulation of gene expression	GO:0010468	Biological Process	2.55406e-11	83%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	2.55406e-11	83%
Blast2go	DNA recombination	GO:0006310	Biological Process	2.55406e-11	83%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family A, palm domain	IPR001098	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA polymerase A	IPR002298	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
446	50		50		1.0
467		25		75	0.99649
539	66			33	0.997452
544		66		33	0.997452
545			33	66	0.997452
546	33	66			0.997452
548	33			66	0.997452
549			33	66	0.997452
553	25			75	0.996476
554	75		25		0.996476
555		75	25		0.996476
559		25	75		0.996476
560	75		25		0.996476
654		33		66	0.997464
655	66	33			0.997464
657			66	33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain