SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49306

Length: 321 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene49306
CGCGAACGCGCCGGCAACGTTTGGTCTTGCGTGTTGTTTACTTGTAGTTTGAAACAGTTTTCTAAACATGTCTTACAAAGGCCCCCCAAAAGTACAAAAGGTGATGGTTCAACCCATCAACCTCATTTTCCGATATTTACAGAATCGTTCTAGAGTACAAGTCTGGTTATATGAAAACATCAACCTCCGCATTGAAGGCCATATTGTTGGTTTCGATGAATACATGAACCTTGTGCTGGATGATGCAGAAGAGGTATACAAGAAGTCTGGCAAGAGGAAGTCTCTGGGCAGGATTATGATGAAAGGTGATAACATCACCCT

Ace file of the UniGene sp_v2.0_unigene49306

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable small nuclear ribonucleoprotein E n=1 Tax=Harpegnathos saltator RepID=E2B6Q5_9HYME	-	-	3.0e-36	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	small nuclear ribonucleoprotein e	-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	spliceosomal snRNP assembly	GO:0000387	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%
Blast2go	precatalytic spliceosome	GO:0071011	Cellular Component	91%
Blast2go	U7 snRNP	GO:0005683	Cellular Component	91%
Blast2go	catalytic step 2 spliceosome	GO:0071013	Cellular Component	91%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	91%
Blast2go	U12-type spliceosomal complex	GO:0005689	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	0.0	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKR7

Fln msg: STOP codon was not found. Distance to subject end: 6 aas,

Fln protein: MSYKGPPKVQKVMVQPINLIFRYLQNRSRVQVWLYENINLRIEGHIVGFDEYMNLVLDDAEEVYKKSGKRKSLGRIMMKGDNIT

Protein Length: 85

Fln nts: CGCGAACGCGCCGGCAACGTTTGGTCTTGCGTGTTGTTTACTTGTAGTTTGAAACAGTTTTCTAAAC_-_ATGTCTTACAAAGGCCCCCCAAAAGTACAAAAGGTGATGGTTCAACCCATCAACCTCATTTTCCGATATTTACAGAATCGTTCTAGAGTACAAGTCTGGTTATATGAAAACATCAACCTCCGCATTGAAGGCCATATTGTTGGTTTCGATGAATACATGAACCTTGTGCTGGATGATGCAGAAGAGGTATACAAGAAGTCTGGCAAGAGGAAGTCTCTGGGCAGGATTATGATGAAAGGTGATAACATCACCCT

Fln Alignment:

AllPineV4_c48081___KVQKVMVQPINLIFRYLQNRSRVQVWLYENINLRIEGHIVGFDEYMNLVLDDAEEVYKKSGKRKSLGRIMMKGDNIT
A9NKR7_______________RVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEISVKRKTHKPLGRILLKGDNIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain