SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49227

Length: 397 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene49227
CCTCATAAGCTGTTCAAATTGTTGGACATGGTAGAAGAATTGGAAGCCCTAAAGGAGGATTTTGGAGTGATCTTCGAGGGTCCTGGATGTCTGGAGATCAGGGATCAATTGCATGAGATGGAGAAGCAATTGGCGCACTCTGCTTGTGAAGTTCTGTGGGGCTTTGGGAAACATATAGAGAGGGATTCAGGGTTGTCTGTTGATGGGAGTCCACCAAAGCTTACTAGCTATGTTGTGAATTATCTCAAGTATATGGTGACTGAATATGGGGACGTGATAACAGAGGTCTTGAGGATGGAGAACAAGACAAGCCTTGCAGAGGGTGTCAGTCATGTTATCGATTCTTGGAGCTAAGTTTGGAGACCAGAACCAAGAGATACAAAGATTCAGCATTGGC

Ace file of the UniGene sp_v2.0_unigene49227

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6Z3_RICCO	-	-	2.0e-16	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	protein	-	-	8.90859e-19	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	8.90859e-19	60%
Blast2go	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	8.90859e-19	60%
Blast2go	cytosol	GO:0005829	Cellular Component	8.90859e-19	60%
Blast2go	exocyst	GO:0000145	Cellular Component	8.90859e-19	60%
Blast2go	extracellular vesicular exosome	GO:0070062	Cellular Component	8.90859e-19	60%
Blast2go	nucleus	GO:0005634	Cellular Component	8.90859e-19	60%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.90859e-19	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 178 aas, your sequence is shorter than subject: 118 - 647

Fln protein: PHKLFKLLDMVEELEALKEDFGVIFEGPGCLEIRDQLHEMEKQLAHSACEVLWGFGKHIERDSGLSVDGSPPKLTSYVVNYLKYMVTEYGDVITEVLRMENKTSLAEGVSHVIDSWS*

Protein Length: 119

Fln nts: CCTCATAAGCTGTTCAAATTGTTGGACATGGTAGAAGAATTGGAAGCCCTAAAGGAGGATTTTGGAGTGATCTTCGAGGGTCCTGGATGTCTGGAGATCAGGGATCAATTGCATGAGATGGAGAAGCAATTGGCGCACTCTGCTTGTGAAGTTCTGTGGGGCTTTGGGAAACATATAGAGAGGGATTCAGGGTTGTCTGTTGATGGGAGTCCACCAAAGCTTACTAGCTATGTTGTGAATTATCTCAAGTATATGGTGACTGAATATGGGGACGTGATAACAGAGGTCTTGAGGATGGAGAACAAGACAAGCCTTGCAGAGGGTGTCAGTCATGTTATCGATTCTTGGAGCTAAGTTTGGAGACCAGAACCAAGAGATACAAAGATTCAGCATTGGC

Fln Alignment:

AllPineV4_c47981___PHKLFKLLDMVEELEALKEDFGVIFEGPGCLEIRDQLHEMEKQLAHSACEVLWGFGKHIERDSGLS--VDGSPPKLTSYVVNYLKYM
A9NWM1_______________PEKLFVLLDMYETMRELLPEIEVIFGGKASAEMREAALSLTKRLAQTAQDTFGDFEEAVEKDATKTSILDGTVHPLTSYVINYVKFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain