SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene49121

Length: 375 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene49121
CCCAGTCGACGTTCCGCAAAGCATAGATAATAGCATCATCTCCACAGTTGGTCTCGGGTTGCGTCCATGCCCTACTGGGAAGACCTGCGCAGGCCCCAACGGAACGATGCTTACCGCAAGTATGAACAACATATCATTTACATTGCCCACGACCGCTCTGCTTCAAGCTAATTATTTCGGCATTAATGGCGTCTTTACAACCGATTTTCCTTCAAATCCTGCGATTACATTTAACTACACGGGAGATAATATACCCCTAAGTCTCTGGACTCCTGTACGTGCAACAAAAGTGAAAGTACTGGAATACAATTCTACAGTGCAGCTGGTATATCAGACAACAAACATCTTCGTGGCAGAGAACCATCCGATGCATCT

Ace file of the UniGene sp_v2.0_unigene49121 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	3.0e-36	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	laccase-like multicopper oxidase 90	-	-	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 124 - 570

Fln protein: PVDVPQSIDNSIISTVGLGLRPCPTGKTCAGPNGTMLTASMNNISFTLPTTALLQANYFGINGVFTTDFPSNPAITFNYTGDNIPLSLWTPVRATKVKVLEYNSTVQLVYQTTNIFVAENHPMH

Protein Length: 125

Fln nts: CCCAGTCGACGTTCCGCAAAGCATAGATAATAGCATCATCTCCACAGTTGGTCTCGGGTTGCGTCCATGCCCTACTGGGAAGACCTGCGCAGGCCCCAACGGAACGATGCTTACCGCAAGTATGAACAACATATCATTTACATTGCCCACGACCGCTCTGCTTCAAGCTAATTATTTCGGCATTAATGGCGTCTTTACAACCGATTTTCCTTCAAATCCTGCGATTACATTTAACTACACGGGAGATAATATACCCCTAAGTCTCTGGACTCCTGTACGTGCAACAAAAGTGAAAGTACTGGAATACAATTCTACAGTGCAGCTGGTATATCAGACAACAAACATCTTCGTGGCAGAGAACCATCCGATGCATCT

Fln Alignment:

AllPineV4_c47854___PVDVPQSIDNSIISTVGLGLRPCPTGKTCAGPNGTMLTASMNNISFTLPTTALLQANYFGINGVFTTDFPSNPAITFNYTGDNIPLSLWTPVRATKVKVLEYNSTVQLVYQTTNIFVAENHPMH
C0PRA7_______________PVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKPPHKFNYTGDDIPRNLWFPLPATKVKVLNYNATVQLVFQSTNIFVAENHPMH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain