SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48899

Length: 366 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48899
ATGGGGCTCTGTTTAAATAATAAGTCTCCATCCCAAGGGAAATTAGTCCATTCTCACATCATTCGAACGGGATTTAATCCAGATATGTATTTGGTTAACATGCTTGTGATAATGTATATCAAGTGTGAAAATCTTGAGGATGCCCGCAAAGTGTTTGACGAAATGTCCGAACGAAATGTCGTCTCGTGGACTGCCATGATTTCAGCTTATGCGAGCCATGGATTTGTTAAGGAAGCATTGAAACTGTTTTTCCGAATGAGAAAAACAGGTGTTCAACCCAATCAGTTCAGTTATTCAAGCATTCTCCCCGCTTGTGCGAACTTGGCAGCTCTGGAACATGGGAAGGAGATCCACGGGGATATTATT

Ace file of the UniGene sp_v2.0_unigene48899 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SL84_RICCO	-	-	2.0e-29	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	pentatricopeptide repeat-containing	-	-	6.70511e-34	68%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 122 - 394

Fln protein: MGLCLNNKSPSQGKLVHSHIIRTGFNPDMYLVNMLVIMYIKCENLEDARKVFDEMSERNVVSWTAMISAYASHGFVKEALKLFFRMRKTGVQPNQFSYSSILPACANLAALEHGKEIHGDII

Protein Length: 123

Fln nts: ATGGGGCTCTGTTTAAATAATAAGTCTCCATCCCAAGGGAAATTAGTCCATTCTCACATCATTCGAACGGGATTTAATCCAGATATGTATTTGGTTAACATGCTTGTGATAATGTATATCAAGTGTGAAAATCTTGAGGATGCCCGCAAAGTGTTTGACGAAATGTCCGAACGAAATGTCGTCTCGTGGACTGCCATGATTTCAGCTTATGCGAGCCATGGATTTGTTAAGGAAGCATTGAAACTGTTTTTCCGAATGAGAAAAACAGGTGTTCAACCCAATCAGTTCAGTTATTCAAGCATTCTCCCCGCTTGTGCGAACTTGGCAGCTCTGGAACATGGGAAGGAGATCCACGGGGATATTATT

Fln Alignment:

AllPineV4_c47593___MGLCLNNKSPSQGKLVHSHIIRTGFNPDMYLVNMLVIMYIKCENLEDARKVFDEMSERNVVSWTAMISAYASHGFVKEALKLFFRMRKTGVQPNQFSYSSILPACANLAALEHGKEIHGDII
B8LKN6_______________LNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain