SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48852

Length: 458 nt

UniGene Fasta

>sp_v2.0_unigene48852
CGTCGTGACCTTGGCTGTCACTCAAGAGTTTATGGGATCGTTCAGCACTTTCAGTGCCAGTGGATCTAGGTGCTAGCATTATTACTGGTGTTGAGGGAGATGTGGCAACAGAAAGAAGACCGGATCCATCTGCATTGCTTTGTACACAGCTTGGCCTGGAGTTGACAGTGCTAAATAGTGACTGCCCTCTATATGATTCTGTGACTGGTCAGAAAGTTCCTGCCACCTTAGATGAGGCACTTGAAGCAGAGTATAACAGCCTGCTTGATGATATGGTGATTCTTGTTGCTCAAAATGGAGATGTAGCAATGCGCATGTCTCTGGATGAGGGGTTAGAATATGCTCTAAAAAACGACGCATTGCACGATCAAACTCAACTGGTTCAGAGTTGGCAAGCAGTAAAGCTCATCTTAACAATTCTGACTGTCAAAGCACAATTCCAGATTCCTCAGCAGGAG

Ace file of the UniGene sp_v2.0_unigene48852

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO	-	-	5.00264e-43	83%
FL-Next	sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	34%
Blast2go	lysine-specific histone demethylase-like protein	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3		IPR000759	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	SWIRM domain	IPR007526	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XUR2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 436 aas, your sequence is shorter than subject: 152 - 811

Fln protein: S*PWLSLKSLWDRSALSVPVDLGASIITGVEGDVATERRPDPSALLCTQLGLELTVLNSDCPLYDSVTGQKVPATLDEALEAEYNSLLDDMVILVAQNGDVAMRMSLDEGLEYALKNDALHDQTQLVQSWQAVKLILTILTVKAQFQIPQQE

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGTTTATGGGATCGTTCAGCACTTTCAGTGCCAGTGGATCTAGGTGCTAGCATTATTACTGGTGTTGAGGGAGATGTGGCAACAGAAAGAAGACCGGATCCATCTGCATTGCTTTGTACACAGCTTGGCCTGGAGTTGACAGTGCTAAATAGTGACTGCCCTCTATATGATTCTGTGACTGGTCAGAAAGTTCCTGCCACCTTAGATGAGGCACTTGAAGCAGAGTATAACAGCCTGCTTGATGATATGGTGATTCTTGTTGCTCAAAATGGAGATGTAGCAATGCGCATGTCTCTGGATGAGGGGTTAGAATATGCTCTAAAAAACGACGCATTGCACGATCAAACTCAACTGGTTCAGAGTTGGCAAGCAGTAAAGCTCATCTTAACAATTCTGACTGTCAAAGCACAATTCCAGATTCCTCAGCAGGAG

Fln Alignment:

AllPineV4_c47537___DLGASIITGVEGDVATERRPDPSALLCTQLGLELTVLNSDCPLYDSVTGQKVPATLDEALEAEYNSLLDDMVILVAQNGDVAMRMSLDEGLEYALKNDA--LHDQTQLVQSWQAVKL
Q7XUR2_______________DLGGSVLTGTFGN--------PLGIVAKQLGLPMHKIRDKCPLYRP-DGSPVDPEVDKKVEGTFNKLLDKSSLLRASMGDVAMDVSLGAALETLRQTDGDLSTDQEMNLFNWHLANL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain