SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48833

Length: 475 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48833
GGTTGACCTCCTTGGCCGTTCTGGGCAGCTCCATGAAGCACATGATTTTATCAAGAAGATGCCTCTGGAACCTAATGCTCGTATTTGGGGAAGCTTGCTTGCTGCTTGCAGAATTCATGGCAACATTGATATCGGACAGGATGTTGCAGAGCACCTTTTCAATTTGGAGCCTGAAAATGCTGGCAATTATGTTTTGTTATCAAATATTTATGCTGCAGCTGGGAGTGGGATGATGTAGTAAAGGTCAGAACAATGATGAAAGAGAAGCGATTGAAAAAGACACCAGGTTGCAGCTTTATTGAGGTGAATAACACAGTCCATGCATTCCTTGTGGGAGATAGATCACACCCTCAATCGGAGGAAATTTATGCAACATTGGAGATCTTGGCGGGCAAGATGGAGGAGGCAGGCTATTTGCCTAACAAGAACTTTGTTCTTCACGACGTGCAGGAGGAAGTTAAAGGAGACATTCTCC

Ace file of the UniGene sp_v2.0_unigene48833 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group]	-	-	5.99994e-41	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	tetratricopeptide repeat-like family protein	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Separated hits, possible frame ERROR between 223 and 226, Distance to subject end: 71 aas, your sequence is shorter than subject: 158 - 312

Fln protein: VDLLGRSGQLHEAHDFIKKMPLEPNARIWGSLLAACRIHGNIDIGQDVAEHLFNLEPENAGNYVLLSNIYAAAxxWDDVVKVRTMMKEKRLKKTPGCSFIEVNNTVHAFLVGDRSHPQSEEIYATLEILAGKMEEAGYLPNKNFVLHDVQEEVKGDIL

Protein Length: 159

Fln nts: GGTTGACCTCCTTGGCCGTTCTGGGCAGCTCCATGAAGCACATGATTTTATCAAGAAGATGCCTCTGGAACCTAATGCTCGTATTTGGGGAAGCTTGCTTGCTGCTTGCAGAATTCATGGCAACATTGATATCGGACAGGATGTTGCAGAGCACCTTTTCAATTTGGAGCCTGAAAATGCTGGCAATTATGTTTTGTTATCAAATATTTATGCTGCAGCTGGxxxGTGGGATGATGTAGTAAAGGTCAGAACAATGATGAAAGAGAAGCGATTGAAAAAGACACCAGGTTGCAGCTTTATTGAGGTGAATAACACAGTCCATGCATTCCTTGTGGGAGATAGATCACACCCTCAATCGGAGGAAATTTATGCAACATTGGAGATCTTGGCGGGCAAGATGGAGGAGGCAGGCTATTTGCCTAACAAGAACTTTGTTCTTCACGACGTGCAGGAGGAAGTTAAAGGAGACATTCTCC

Fln Alignment:

AllPineV4_c47513___VDLLGRSGQLHEAHDFIKKMPLEPNARIWGSLLAACRIHGNIDIGQDVAEHLFNLEPENAGNYVLLSNIYAAAGxWDDVVKVRTMMKEKRLKKTPGCSFIEVNNTVHAFLVGDRSHPQSEEIYATLEILAGKMEEAGYLPNKNFVLHDVQEEVKGDIL
D5ADG9_______________VDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGxWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENML

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
392		66	33		0.997476
398	66		33		0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain