SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48791

Length: 284 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48791
AGAGACATAGATATGCATGTTCATCGTATTGGAAGGACGGGGCGGGCAGGGGACAAAGAAGGCATAGCTTACACCCTTGTTACAGAAAAGGAAGCACGCTTTGCTGGGGAACTTGTGAACAGTTTGGTTGCTGCTGGTCAAAATGTCTCTGAGGAGCTAATGGATCTGGCAATGAAGGATAGTCGTTTCCGGGCCAAACGAGAGGCCAGGAAAGTCTCTGGTGGGAGGAAAGGGGGTGGGCGAGGAGGTGGAAGGGGTGGCAGTGGCAGCAGTGGTGGTACATT

Ace file of the UniGene sp_v2.0_unigene48791 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp\|O22907.2\|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb\|AAL15330.1\| At2g47330/T8I13.17 [Arabidopsis thaliana] gb\|AAB63833.2\| putative ATP-dependent RNA helicase [Arabidop	-	-	3.0e-26	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	dead-box atp-dependent rna helicase 24-like	-	-	1.39009e-33	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.39009e-33	91%
Blast2go	intracellular part	GO:0044424	Cellular Component	1.39009e-33	91%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB12

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 94 - 236

Fln protein: RDIDMHVHRIGRTGRAGDKEGIAYTLVTEKEARFAGELVNSLVAAGQNVSEELMDLAMKDSRFRAKREARKVSGGRKGGGRGGGRGGSGSSGGT

Protein Length: 95

Fln nts: AGAGACATAGATATGCATGTTCATCGTATTGGAAGGACGGGGCGGGCAGGGGACAAAGAAGGCATAGCTTACACCCTTGTTACAGAAAAGGAAGCACGCTTTGCTGGGGAACTTGTGAACAGTTTGGTTGCTGCTGGTCAAAATGTCTCTGAGGAGCTAATGGATCTGGCAATGAAGGATAGTCGTTTCCGGGCCAAACGAGAGGCCAGGAAAGTCTCTGGTGGGAGGAAAGGGGGTGGGCGAGGAGGTGGAAGGGGTGGCAGTGGCAGCAGTGGTGGTACATT

Fln Alignment:

AllPineV4_c47468___HVHRIGRTGRAGDKEGIAYTLVTEKEARFAGELVNSLVAAGQNVSEELM
D5AB12_______________YVHRIGRTGRAG-KKGVAHTFFTQADKARSGELVNVLREAGQVVPDDLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain