SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48708

Length: 577 nt

UniGene Fasta

>sp_v2.0_unigene48708
GCAAGTTGAAGGCATAAAGCCTGACTCAGTAACCTTTGTGAACGTGCTCCCCATCTGTGCCCGCTTGGAGATTCTGAAACATGGTAAGGAGATCCATAGTTACATCGTTAGAAATGAACTCGATTCATATGTGAATGTGGGCATTTCCCTTATTGATATATATGCCAAATGTGGGAGCATAGACTATGCACGACAGCTGTTTGAAAAAATGTCTAAAAGAGATGTGGTTTCATGGAATGCCATGATTGCGGGTTATGTTCAGAATGGACATGCCAATGAGGCCTTGGAACTCTTTCATCGTATGCAACTATACCCCAAGTGACGCTCAACGCGGTTACCCTGTTGAGCGTGCTCCCGGCATGCGGCCATTTAGCAGCTCTGGAAGAAGGTAAGTGGATCCATGACTATGTAGTTAGAAATGGATTTGAGGTAGATGTGCCTATGGGTACTGCTCTCATCGATATGTATGCTAAATGTGGGAGCATAGAAATTGCTCGACAACTCTTTGATGGAATGTCGAAGAGAGACTTGATCTCATGGAATGCCATTATTGGGGGTTATGGGATGCATGGACATT

Ace file of the UniGene sp_v2.0_unigene48708

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LW63.1\|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj\|BAB02277.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76753.1\| pentatric	-	-	5.99756e-43	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	70%
Blast2go	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	70%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	70%
Blast2go	leaf development	GO:0048366	Biological Process	70%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3	Domain of unknown function DUF629	IPR006865	-	-
Sma3	Domain of unknown function DUF627, N-terminal	IPR006866	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR013129	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 392 aas, your sequence is shorter than subject: 192 - 795

Fln protein: QVEGIKPDSVTFVNVLPICARLEILKHGKEIHSYIVRNELDSYVNVGISLIDIYAKCGSIDYARQLFEKMSKRDVVSWNAMIAGYVQNGHANEALELFHRMxxxxxxxxNAVTLLSVLPACGHLAALEEGKWIHDYVVRNGFEVDVPMGTALIDMYAKCGSIEIARQLFDGMSKRDLISWNAIIGGYGMHGH

Protein Length: 193

Fln nts: GCAAGTTGAAGGCATAAAGCCTGACTCAGTAACCTTTGTGAACGTGCTCCCCATCTGTGCCCGCTTGGAGATTCTGAAACATGGTAAGGAGATCCATAGTTACATCGTTAGAAATGAACTCGATTCATATGTGAATGTGGGCATTTCCCTTATTGATATATATGCCAAATGTGGGAGCATAGACTATGCACGACAGCTGTTTGAAAAAATGTCTAAAAGAGATGTGGTTTCATGGAATGCCATGATTGCGGGTTATGTTCAGAATGGACATGCCAATGAGGCCTTGGAACTCTTTCATCGTATGCAxxxxxxxxxxxxxxxxxxxxxCAACGCGGTTACCCTGTTGAGCGTGCTCCCGGCATGCGGCCATTTAGCAGCTCTGGAAGAAGGTAAGTGGATCCATGACTATGTAGTTAGAAATGGATTTGAGGTAGATGTGCCTATGGGTACTGCTCTCATCGATATGTATGCTAAATGTGGGAGCATAGAAATTGCTCGACAACTCTTTGATGGAATGTCGAAGAGAGACTTGATCTCATGGAATGCCATTATTGGGGGTTATGGGATGCATGGACATT

Fln Alignment:

AllPineV4_c47373___QVEGIKPDSVTFVNVLPICARLEILKHGKEIHSYIVRNELDSYVNVGISLIDIYAKCGSIDYARQLFEKMSKRDVVSWNAMIAGYVQNGHANEALELFHRMQxxxxxxxNAVTLLSVLPACGHLAALEEGKWIHDYVVRNGFEVDVPMGTALIDMYAKCGSIEIARQLFDGMSKRDLISWNAIIGGYGMHGH
B8LQA8_______________QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQxxxxxxxNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain