SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48607

Length: 482 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48607
AGAAGCACCAAGGAAGATCCTAAAGCATCAGAGATTCTATTTCAAAATCATGATATCAAGGACCTGACTGTGGCTGATATCCTGAAAGCCACAAATAATTTTGATCAGGCCAACATCATTGGATGTGGAGGATTTGGATTGGTATACAAAGCCACCCTGGGGAGTGGTACAAAAGTAGCTATCAAAAGATTAACAGGAGATTGTGGTCAGATGGAGCGTGAATTCACGGCAGAAGTGGAAGCTTTGTCAAGAGCTCAACATAAGAATCTTGTATCCTTGCAAGGGTATTGCAGAATTGGCAATTGCAGGTTGCTTATTTACTCCTACATGGAAAATGGGAGTTTGGATTATTGGTTGCATGAAAGGCATGATGGAAGCCCAATGTTGGATTGGCCTACTCGACTAAGAATAGCTCAAGGAGCAAGCAGGGGGTTGGCATATTTGCATAGGGTATGTGATCCTCACATTGTACATACAGATAT

Ace file of the UniGene sp_v2.0_unigene48607 (antisense)

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytosulfokine receptor, putative n=1 Tax=Ricinus communis RepID=B9SQH2_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	phytosulfokine receptor	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	86%
Blast2go	peptide receptor activity	GO:0001653	Molecular Function	86%
Blast2go	catalytic activity	GO:0003824	Molecular Function	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 270 aas, your sequence is shorter than subject: 160 - 656

Fln protein: RSTKEDPKASEILFQNHDIKDLTVADILKATNNFDQANIIGCGGFGLVYKATLGSGTKVAIKRLTGDCGQMEREFTAEVEALSRAQHKNLVSLQGYCRIGNCRLLIYSYMENGSLDYWLHERHDGSPMLDWPTRLRIAQGASRGLAYLHRVCDPHIVHTD

Protein Length: 161

Fln nts: AGAAGCACCAAGGAAGATCCTAAAGCATCAGAGATTCTATTTCAAAATCATGATATCAAGGACCTGACTGTGGCTGATATCCTGAAAGCCACAAATAATTTTGATCAGGCCAACATCATTGGATGTGGAGGATTTGGATTGGTATACAAAGCCACCCTGGGGAGTGGTACAAAAGTAGCTATCAAAAGATTAACAGGAGATTGTGGTCAGATGGAGCGTGAATTCACGGCAGAAGTGGAAGCTTTGTCAAGAGCTCAACATAAGAATCTTGTATCCTTGCAAGGGTATTGCAGAATTGGCAATTGCAGGTTGCTTATTTACTCCTACATGGAAAATGGGAGTTTGGATTATTGGTTGCATGAAAGGCATGATGGAAGCCCAATGTTGGATTGGCCTACTCGACTAAGAATAGCTCAAGGAGCAAGCAGGGGGTTGGCATATTTGCATAGGGTATGTGATCCTCACATTGTACATACAGATAT

Fln Alignment:

AllPineV4_c47253___KDLTVADILKATNNFDQANIIGCGGFGLVYKATLGSGTKVAIKRLTGDCGQMEREFTAEVEALSRAQHKNLVSLQGYCRIGNCRLLIYSYMENGSLDYWLHERHDGSPMLDWPTRLRIAQGASRGLAYLHRVCDPHIVHTD
C0PRI9_______________RTFTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGK--GQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
207	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain