SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48568

Length: 528 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene48568
ATAACTCCTCAAATCCACAGTGCCATTCGAACAGCTTCACTGCATATCGCTATTTTCTCTAAAGGATACGCAGACTCGCCTTGGTGTCTTAATGAGCTCTTGCTCATGTTCGAATCGGGGTCAACAATTATTCCAGTCTTCTATGATGTCGAGCCTGCAGATCTTCGATGGGTAACGCAAAGCGAAAAAGGAGTCTATGCTCGATCCCTGCAAACACTCGAAAACAAGAGAACGGTCGAATCTAAACCACGATACGACCCCGATACCATCCAGAAATGGAGTAAGGCTCTCACTGATGCTGCAGAAATAAAAGGTTTCGATAAGAAGACGTATAATGGCGATGAGAAACAGCTCCTTGAACAGGTCGTGGAAGCAGTGCTGGAAACAGTTAAAAGGCCATTACACGTGTCTAGATATTCAACTGGGTTGGATGAGAAAGTTGCAGAATTTGAAGGGGCGATGTCACTCGACCAACAAAGCAGCGGAGAGACTAGAGTTATAGGAATTGTCGGAGTTGGTGGTGCTGGC

Ace file of the UniGene sp_v2.0_unigene48568

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	tir nbs lrr disease resistance protein	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 808 aas, your sequence is shorter than subject: 176 - 1071

Fln protein: ITPQIHSAIRTASLHIAIFSKGYADSPWCLNELLLMFESGSTIIPVFYDVEPADLRWVTQSEKGVYARSLQTLENKRTVESKPRYDPDTIQKWSKALTDAAEIKGFDKKTYNGDEKQLLEQVVEAVLETVKRPLHVSRYSTGLDEKVAEFEGAMSLDQQSSGETRVIGIVGVGGAG

Protein Length: 177

Fln nts: ATAACTCCTCAAATCCACAGTGCCATTCGAACAGCTTCACTGCATATCGCTATTTTCTCTAAAGGATACGCAGACTCGCCTTGGTGTCTTAATGAGCTCTTGCTCATGTTCGAATCGGGGTCAACAATTATTCCAGTCTTCTATGATGTCGAGCCTGCAGATCTTCGATGGGTAACGCAAAGCGAAAAAGGAGTCTATGCTCGATCCCTGCAAACACTCGAAAACAAGAGAACGGTCGAATCTAAACCACGATACGACCCCGATACCATCCAGAAATGGAGTAAGGCTCTCACTGATGCTGCAGAAATAAAAGGTTTCGATAAGAAGACGTATAATGGCGATGAGAAACAGCTCCTTGAACAGGTCGTGGAAGCAGTGCTGGAAACAGTTAAAAGGCCATTACACGTGTCTAGATATTCAACTGGGTTGGATGAGAAAGTTGCAGAATTTGAAGGGGCGATGTCACTCGACCAACAAAGCAGCGGAGAGACTAGAGTTATAGGAATTGTCGGAGTTGGTGGTGCTGGC

Fln Alignment:

AllPineV4_c47210___ITPQIHSAIRTASLHIAIFSKGYADSPWCLNELLLMFE---SGSTIIPVFYDVEPADLRWV--------------------TQSEKGVYARSLQTLENKRTVES-----KPRYDPDTIQKWSKALTDAAEIKGFDKKTYNGDEKQLLEQVVEAVLETVKR---PLHVSRYSTGLDEKVAEFEGAMSLDQQ
C0PQE2_______________ITPQIKRAIRTASVHIAIFSKGYADSTWCLDELLDMLDTVKSGSAILPVFYNVQPSDLRWTRGGDTVYARVLSIFLCILLCTRGENGVYARALRKLQKKTTLDSVTNKKKPRHDSDTIEKWRKALSDVSLISGFELNACNGDERQLVDKVVQRVLEKVPKVHPPLNVAKYPSGLDEKIQDVDRILSLQQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain