SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48422

Length: 384 nt

UniGene Fasta

>sp_v2.0_unigene48422
CGTCGTGACCTTGGCTGTCATTGTGGACATTGGAGATATCTTAGGTGCAGCTGGCTCTGTAAGCGGACTGAGAAAGGAGAGCTTTCGGTGTATGTGAAGGAATTTTCAATTCTTACAAAGTCCCTACTTCCATTGCCGGAGAAGTATCATGGTCTGACTGATGTTGAGAAGCGATATCGCCAGCGATATTTGGACATGATTGCAAATCCAGAAGTAGCGGATACTTTTCGTTCTAGATCAAAGATTATTTCAGAGATTCGTAAAAAGATGGAAGAGCTTGGCTTCATTGAAGTTGAAACTCCCGTGCTTCAGGTTACCTTCTCTCTGTCATTTGAGTTCTCACATATGGGCTTACATGTAATATGAGGATATCTGAACCACTGT

Ace file of the UniGene sp_v2.0_unigene48422

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysyl-tRNA synthetase, class II [Arabidopsis thaliana] dbj\|BAB01756.1\| lysyl-tRNA synthetase [Arabidopsis thaliana] gb\|AAN86150.1\| putative lysyl-tRNA synthetase [Arabidopsis thaliana] gb\|AEE75364.1\| Lysyl-tRNA synthetase, class II [Arabidopsis thaliana]	-	-	2.0e-32	74%
FL-Next	sp=Lysyl-tRNA synthetase; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	35%
Blast2go	lysyl-trna synthetase	-	-	6.27574e-40	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	ovule development	GO:0048481	Biological Process	6.27574e-40	88%
Blast2go	binding	GO:0005488	Molecular Function	6.27574e-40	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	6.27574e-40	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.27574e-40	88%

Source	InterPros	Term	Type	Identity
Sma3	Lysyl-tRNA synthetase, class II	IPR002313	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Lysyl-tRNA synthetase, class II, C-terminal	IPR018149	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q43776

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 278 aas, your sequence is shorter than subject: 122 - 588

Fln protein: RRDLGCHCGHWRYLRCSWLCKRTEKGELSVYVKEFSILTKSLLPLPEKYHGLTDVEKRYRQRYLDMIANPEVADTFRSRSKIISEIRKKMEELGFIEVETPVLQVTFSLSFEFSHMGLHVI*

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCATTGTGGACATTGGAGATATCTTAGGTGCAGCTGGCTCTGTAAGCGGACTGAGAAAGGAGAGCTTTCGGTGTATGTGAAGGAATTTTCAATTCTTACAAAGTCCCTACTTCCATTGCCGGAGAAGTATCATGGTCTGACTGATGTTGAGAAGCGATATCGCCAGCGATATTTGGACATGATTGCAAATCCAGAAGTAGCGGATACTTTTCGTTCTAGATCAAAGATTATTTCAGAGATTCGTAAAAAGATGGAAGAGCTTGGCTTCATTGAAGTTGAAACTCCCGTGCTTCAGGTTACCTTCTCTCTGTCATTTGAGTTCTCACATATGGGCTTACATGTAATATGAGGATATCTGAACCACTGT

Fln Alignment:

AllPineV4_c47043___RTEKGELSVYVKEFSILTKSLLPLPEK-------------YHGLT-------------------DVEKRYRQRYLDMIANPEVADTFRSRSKIISEIRKKMEELGFIEVETPVLQVT
Q43776_______________KSKRGELSIFAKPFIVLAPCLHMLPRRLTSSIVDETRTQNFQGITAYDTWTPGDLRNPESYVLRDQETRYRQRYLDLMMNPEVRALFRTRARIISYIRSFLDNLEFLEVETPSMNLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain