SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48407

Length: 423 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene48407
TGCAATGATTGCCGGATATGCCCAGCAGGAGTGTAGCAACAAAGCTTTGGACCTCTTTTGCCAAATGCAAGGGACATATGTCAAACCAGACGAGTTTACTCTAGCCAGCGTTTTGAGTGGATGTGCCAACGTGAAAACTCTGGAATATGGCAAGCAGATCCAAACCCAAACTATCAAGAATGGATTAATACTTTGTGTCTTTGTCAGTAATGCACTTATTACAATGTATGCGAAGGGTCAAAGCCTTGGTGATGCAAGGCAAGTATTTGATGAATTGGAAGAAGCAAATACTGTTTCTTGGAATGCAATGGTCGCTGGATATGCTCAGCATGGCTATTATGAGGAGGCCATGGAACTCTTCTGCCAAATGCTGCAGTCAAACATAATTAAACCGGGGCAATTCACCTTGGCCATGGTATTAAG

Ace file of the UniGene sp_v2.0_unigene48407

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group]	-	-	4.0e-24	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Blast2go	pentatricopeptide repeat-containing	-	-	2.76893e-32	63%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 19 aas, atg_distance in limit (1-15): atg_distance = 1, No stop codon before M and low homology subject, your sequence is shorter than subject: 139 - 232

Fln protein: MIAGYAQQECSNKALDLFCQMQGTYVKPDEFTLASVLSGCANVKTLEYGKQIQTQTIKNGLILCVFVSNALITMYAKGQSLGDARQVFDELEEANTVSWNAMVAGYAQHGYYEEAMELFCQMLQSNIIKPGQFTLAMVL

Protein Length: 140

Fln nts: TGCA_-_ATGATTGCCGGATATGCCCAGCAGGAGTGTAGCAACAAAGCTTTGGACCTCTTTTGCCAAATGCAAGGGACATATGTCAAACCAGACGAGTTTACTCTAGCCAGCGTTTTGAGTGGATGTGCCAACGTGAAAACTCTGGAATATGGCAAGCAGATCCAAACCCAAACTATCAAGAATGGATTAATACTTTGTGTCTTTGTCAGTAATGCACTTATTACAATGTATGCGAAGGGTCAAAGCCTTGGTGATGCAAGGCAAGTATTTGATGAATTGGAAGAAGCAAATACTGTTTCTTGGAATGCAATGGTCGCTGGATATGCTCAGCATGGCTATTATGAGGAGGCCATGGAACTCTTCTGCCAAATGCTGCAGTCAAACATAATTAAACCGGGGCAATTCACCTTGGCCATGGTATTAAG

Fln Alignment:

AllPineV4_c47025___AMIAGYAQQECSNKALDLFCQMQGTYVKPDEFTLASVLSGCANVKTLEYGKQ-IQTQTIKNGLILCVFVSNALITMYAKGQSLGDARQVFDELE-EANTVSWNAMVAGYAQH
D5AB53_______________AMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMPIEPDTAVWQSLLGACRTH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain