SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48263

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48263
ATTTCTGTCAAATTTCTCCACTTTGGATTACTTGGAAATGGATGCAAATAAATTCACCGGTAGCATTCCACAAGAATTTGGCCAACTCACTAGTCTCCAAGTCCTTTACCTCTCTAACAATGAATTATCAGGGGCCATTCCCTTTTCTTTGTCAAATATCTCCACTTTGGTTGACTTGGAGATTTTCGAAAACAAACTCATTGGTAGCATTCCACAAGAATTGGGCCAACTTGCTAGTCTCCAAACCCTTTACC

Ace file of the UniGene sp_v2.0_unigene48263 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	6.0e-07	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	protein	-	-	3.7682e-19	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 84 - 946

Fln protein: FLSNFSTLDYLEMDANKFTGSIPQEFGQLTSLQVLYLSNNELSGAIPFSLSNISTLVDLEIFENKLIGSIPQELGQLASLQTLY

Protein Length: 85

Fln nts: ATTTCTGTCAAATTTCTCCACTTTGGATTACTTGGAAATGGATGCAAATAAATTCACCGGTAGCATTCCACAAGAATTTGGCCAACTCACTAGTCTCCAAGTCCTTTACCTCTCTAACAATGAATTATCAGGGGCCATTCCCTTTTCTTTGTCAAATATCTCCACTTTGGTTGACTTGGAGATTTTCGAAAACAAACTCATTGGTAGCATTCCACAAGAATTGGGCCAACTTGCTAGTCTCCAAACCCTTTACC

Fln Alignment:

AllPineV4_c46858___FLSNFSTLDYLEMDANKFTGSIPQEFGQLTSLQVLYLSNNELSGAIPFSLSNISTLVDLEIFENKLIGSIPQELGQLASLQTL
C0PTA1_______________YMSPTNTIFYLSN--NNLTGEIPASIGCLRSLRLLNLSGNQLEGVIPASLGNISTLEELDLSKNHLKGEIPEGLSKLHELAVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain