SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene48187

Length: 444 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene48187
ATTGGGGCAATGTGCTAGCCCTTCACATGACTAAGCCACGGGGATTCCATTACAAAAGTGGAATGTACATTTACATTCAATGTCCAGAAATTTCTCTATTCGAATGGCATCCGTTTTCTTTGACATCTGCGCCGGGAGATGAATATCTGAGCGTGCATATTAGAAATTTGGGAGATTGGACTCACGACATAGGGAGCTTATTCCAGAAGGCTTTAAACGTGGCAGGGGAGGATGGCCCATGCGATTCTTCCAGAGACGTTGCCACCTTACCAAGATTCTCCAAAATATACATCGACGGTCCTTACGGTTCAGCGGCGCAAGATCACAGTAAATATGACGTGATGCTTCTGATCGGACTTGGCATCGGCGCAACGCCGTTTATTAGCATTCTTAAAGACATTGTTAACGATGAGAAGACACGTCGCAGCCATATTGATGACGAAG

Ace file of the UniGene sp_v2.0_unigene48187 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Respiratory burst oxidase-like protein J n=3 Tax=Hordeum vulgare subsp. vulgare RepID=B2D0P0_HORVD	-	-	2.94273e-44	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	respiratory burst oxidase	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b245, heavy chain	IPR000778	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	NADPH oxidase Respiratory burst	IPR013623	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABF5

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 147 - 358

Fln protein: WGNVLALHMTKPRGFHYKSGMYIYIQCPEISLFEWHPFSLTSAPGDEYLSVHIRNLGDWTHDIGSLFQKALNVAGEDGPCDSSRDVATLPRFSKIYIDGPYGSAAQDHSKYDVMLLIGLGIGATPFISILKDIVNDEKTRRSHIDDE

Protein Length: 148

Fln nts: ATTGGGGCAATGTGCTAGCCCTTCACATGACTAAGCCACGGGGATTCCATTACAAAAGTGGAATGTACATTTACATTCAATGTCCAGAAATTTCTCTATTCGAATGGCATCCGTTTTCTTTGACATCTGCGCCGGGAGATGAATATCTGAGCGTGCATATTAGAAATTTGGGAGATTGGACTCACGACATAGGGAGCTTATTCCAGAAGGCTTTAAACGTGGCAGGGGAGGATGGCCCATGCGATTCTTCCAGAGACGTTGCCACCTTACCAAGATTCTCCAAAATATACATCGACGGTCCTTACGGTTCAGCGGCGCAAGATCACAGTAAATATGACGTGATGCTTCTGATCGGACTTGGCATCGGCGCAACGCCGTTTATTAGCATTCTTAAAGACATTGTTAACGATGAGAAGACACGTCGCAGCCATATTGATGACGAAG

Fln Alignment:

AllPineV4_c46773___GNVLALHMTKPRGFHYKSGMYIYIQCPEISLFEWHPFSLTSAPGDEYLSVHIRNLGDWTHDIGSLFQKALN--VAGEDGPCDSS-RDVATLPRFSKIYIDGPYGSAAQDHSKYDVMLLIGLGIGATPFISILKDIVNDEK
D5ABF5_______________GNVLTLHMSKPQGFRYKSGQYMFVNCPAVSSFEWHPFSITSAPGDNYLSVHIRTLGDWTRELKNSFAEVCEPPMGGKSGLLRADYMQGKNNPRFPRLLIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDIVNHMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain