SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47985

Length: 406 nt

UniGene Fasta

>sp_v2.0_unigene47985
TGGCTAATGGTGTTCAAATCATCACAGATAATGCCTCTAACTATGTTCTTACTAGTAAAATGTTAGAGGAAAAGCACAAAACCATCTTTTGGACACCATGTGTTGCACATTGCATAGACCTCATGCTTGAGGATATTGGCAAAATAGATTGGGTCAAGAACATTGTAGAGCATGCCAAAAACATAACAAAATATATCTACAATCACTAATGGATTTTGAGCCTGATGATGAAACACACAGGGGGCAGGGAATCGGGATATTATTAGGCCTGGCATCACTAGATTTGCAACTCATTTTTGACGTTGCAATCTATGCTTTCCCAATATAGAAACTTGCAAAGGTTGTTTTCCAGTGATGACTGGAATGAATGCCAATGGTCTCGCAAACAGGATGGCAAAGATAAGTT

Ace file of the UniGene sp_v2.0_unigene47985

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 domain containing protein	-	-	7.0e-27	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%
Blast2go	uncharacterized protein loc100247282	-	-	6.6787e-31	63%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5CA46

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 134 - 230

Fln protein: ANGVQIITDNASNYVLTSKMLEEKHKTIFWTPCVAHCIDLMLEDIGKIDWVKNIVEHAKNITKYIYNH*WILSLMMKHTGGRESGYY*AWHH*ICNSFLTLQSMLSQYRNLQRLFSSDDWNECQWSRKQDGKDK

Protein Length: 135

Fln nts: TGGCTAATGGTGTTCAAATCATCACAGATAATGCCTCTAACTATGTTCTTACTAGTAAAATGTTAGAGGAAAAGCACAAAACCATCTTTTGGACACCATGTGTTGCACATTGCATAGACCTCATGCTTGAGGATATTGGCAAAATAGATTGGGTCAAGAACATTGTAGAGCATGCCAAAAACATAACAAAATATATCTACAATCACTAATGGATTTTGAGCCTGATGATGAAACACACAGGGGGCAGGGAATCGGGATATTATTAGGCCTGGCATCACTAGATTTGCAACTCATTTTTGACGTTGCAATCTATGCTTTCCCAATATAGAAACTTGCAAAGGTTGTTTTCCAGTGATGACTGGAATGAATGCCAATGGTCTCGCAAACAGGATGGCAAAGATAAGTT

Fln Alignment:

AllPineV4_c46538___NGVQIITDNASNYVLTSKMLEEKHKTIFWTPCVAHCIDLMLEDIGKIDWVKNIVEHAKNITKYIYNH*WILSLMMKHTGGRESGYY*AWHH*ICNSFLTLQSMLSQYRNLQRLFSSDDWNECQWSRKQDG
A5CA46_______________NVVQVITDNASNYVNDGMRLMEKMRRLWWTPCAAHCIDLMLEDIGKLNVHVTILSRARQVVKFIYGHTWVLSLMRTFTKNHELLHPVITR--FATAFLTLQSLYKQKQALIAMFSSEKWCSSTWAKKVEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain