SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47973

Length: 559 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene47973
GGAAGGAGTGGACCATGACGAGATATTTGCATGGGTTGCCCGATATACCACTATCCGACCTATTTTCCTATCGCTGCCTCTCAACGATGGAGCCTACATCAAATGGATGTTAAGACTGCTTTCCTGCATGGCTCGCTTAAGGAGGAAGTCTACTTGGACCAACCTGTAATGTTTGAAGATAGGAAAAACAATGATATGCAAGCAACTAACAATTTTTCACCACAGAAATTTCAAAACAATTAGAACACACCCATAACAATCATAAATATGGAAGCAGCTGAGCCATTTTATTGTAAAACTGGTGCAAGAGTACAAAATATGGAAGGAATGCACCTGGGCTTGCCTTAAAGGCAAGCGGAGAAAAGCTCAGGTGAAGCAATGACAATTCGGAGCGATAATCAATTGACCAACTATTGCACTGCGCAGTCCCCGAACAATTCTAAACTGTCTGCTTCAAAGATATGGCTGAAAACCCCACCTCCGGTGCCCAAAAAATTTTGAAAAATTATTTCTAGGTTCCTCAAGCAAAACCCACAGAAACCCATAAATGGTTTGGCCT

Ace file of the UniGene sp_v2.0_unigene47973 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY09_PICAB	-	-	3.0e-09	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	reverse transcriptase	-	-	4.60905e-09	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Separated hits, possible frame ERROR between 64 and 70, Unexpected STOP codon at 3' end. Distance to subject end: 120 aas, your sequence is shorter than subject: 81 - 363

Fln protein: EGVDHDEIFAWVARYTTIRPxxxIAASQRWSLHQMDVKTAFLHGSLKEEVYLDQPVMFEDRKNNDMQATNNFSPQKFQNN*

Protein Length: 82

Fln nts: GGAAGGAGTGGACCATGACGAGATATTTGCATGGGTTGCCCGATATACCACTATCCGACCTATxxxxxxTATCGCTGCCTCTCAACGATGGAGCCTACATCAAATGGATGTTAAGACTGCTTTCCTGCATGGCTCGCTTAAGGAGGAAGTCTACTTGGACCAACCTGTAATGTTTGAAGATAGGAAAAACAATGATATGCAAGCAACTAACAATTTTTCACCACAGAAATTTCAAAACAATTAGAACACACCCATAACAATCATAAATATGGAAGCAGCTGAGCCATTTTATTGTAAAACTGGTGCAAGAGTACAAAATATGGAAGGAATGCACCTGGGCTTGCCTTAAAGGCAAGCGGAGAAAAGCTCAGGTGAAGCAATGACAATTCGGAGCGATAATCAATTGACCAACTATTGCACTGCGCAGTCCCCGAACAATTCTAAACTGTCTGCTTCAAAGATATGGCTGAAAACCCCACCTCCGGTGCCCAAAAAATTTTGAAAAATTATTTCTAGGTTCCTCAAGCAAAACCCACAGAAACCCATAAATGGTTTGGCCT

Fln Alignment:

AllPineV4_c46524___GVDHDEIFAWVARYTTIRPIxxIAASQRWSLHQMDVKTAFLHGSLKEEVYLDQPVMFEDRKNND
B8LKV8_______________GVDYNETFAPVARLDTIRMVxxIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain