SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47961

Length: 693 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene47961

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Electron-transferring-flavoprotein dehydrogenase n=3 Tax=Arabidopsis RepID=O22854_ARATH	-	-	66%
FL-Next	tr=Biotin synthase Bio B; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	electron transfer flavoprotein-ubiquinone mitochondrial-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to absence of light	GO:0009646	Biological Process	85%
Blast2go	leucine catabolic process	GO:0006552	Biological Process	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Thiamine biosynthesis Thi4 protein	IPR002922	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3	Electron transfer flavoprotein-ubiquinone oxidoreductase	IPR007859	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
516	25		75		0.996473
518			75	25	0.996473
519		75	25		0.996473
601	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain