SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47940

Length: 416 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene47940
GGAAGACCCTCAAACTGGCATGGCTGTGCCACGGTATGACTCCGTCACCATTCAAAATTGGAGTAATGCTCTTTCGAGCCTTGCAGACATAAGTGGGTTTGATCTGGATGGCAAGTTTAAAGGTGACGAGGGCGAAATGTTAGAGAATGTTATCCAAAGTGTGGTGGAAATATTGTCTGTGAAGAAAAGAACAAGATTGTATGTGGCCAAATATCCCACTGGCTTAGCAGACAAGGTAAACGATTTCGAAAAAGTATCAAGGAAGCACCACACAGGAAAAGTCCAGATGGTCGGCATAGTCGGGTTAGGTGGAGTGGGGAAGACAACTTTGGCTTTAGAGTTCTTCAATAGAAAGCGTTCAGAATACGATAAAACCCACTTTTTGTCTGGTGTAAGAGAAAACGCTAAAAGCCCAT

Ace file of the UniGene sp_v2.0_unigene47940 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	2.0e-31	58%
FL-Next	tr=Putative TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	58%
Blast2go	tir-nbs-lrr disease resistance protein	-	-	4.94839e-36	62%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E9NZS6

Fln msg: Distance to subject end: 1224 aas, your sequence is shorter than subject: 138 - 1490

Fln protein: EDPQTGMAVPRYDSVTIQNWSNALSSLADISGFDLDGKFKGDEGEMLENVIQSVVEILSVKKRTRLYVAKYPTGLADKVNDFEKVSRKHHTGKVQMVGIVGLGGVGKTTLALEFFNRKRSEYDKTHFLSGVRENAKSP

Protein Length: 139

Fln nts: GGAAGACCCTCAAACTGGCATGGCTGTGCCACGGTATGACTCCGTCACCATTCAAAATTGGAGTAATGCTCTTTCGAGCCTTGCAGACATAAGTGGGTTTGATCTGGATGGCAAGTTTAAAGGTGACGAGGGCGAAATGTTAGAGAATGTTATCCAAAGTGTGGTGGAAATATTGTCTGTGAAGAAAAGAACAAGATTGTATGTGGCCAAATATCCCACTGGCTTAGCAGACAAGGTAAACGATTTCGAAAAAGTATCAAGGAAGCACCACACAGGAAAAGTCCAGATGGTCGGCATAGTCGGGTTAGGTGGAGTGGGGAAGACAACTTTGGCTTTAGAGTTCTTCAATAGAAAGCGTTCAGAATACGATAAAACCCACTTTTTGTCTGGTGTAAGAGAAAACGCTAAAAGCCCAT

Fln Alignment:

AllPineV4_c46489___PRYDSVTIQNWSNALSSLADISGFDLDGKFKGDEGEMLENVIQSVVEILSVKKRTRLYVAKYPTGLADKVNDFE-KVSRKHHTGKVQMVGIVGLGGVGKTTLALEFFNRKRSEYDKTHFLSGVRENAKS
E9NZS6_______________PRYDSTTIENWRDALSRVADISGFDPDVGFNGDEGELL----NQLVEVVLKKGKKKLNVAQYPTGLDDLVEDFETKLSLQQHGERVQFVGITGLGGAGKTTLVKELFNRNSSRYSKSCFLIDVREKAKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain