SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47817

Length: 295 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene47817
TGGCAGAAGGAAAATATGGACCTGTCTATAGGGCTGTTTTGACAGGTGGTCTCCACGTTGCTGTTAAGGTCCTGGTTCATGAAAAAACTCTCAATGACCAGGAGGCAGCAGCAGAGCTTGAATTTTTGGGTAAGATAAAGCACCCTAATCTGGTTCCTCTAGTTGGTTATTGTTTAGCAGGTGATCAGAGAATAGCAATTTATGATTTTATGGAGAATGGCACTCTTCATCATTGGCTTCATGATCTTCCGCTGGGTACAGAAGCCACAGAGGATTGGAGTGCAGATACATGGGA

Ace file of the UniGene sp_v2.0_unigene47817

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Y7_RICCO	-	-	1.0e-39	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	receptor-like protein kinase	-	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 291 aas, your sequence is shorter than subject: 97 - 656

Fln protein: AEGKYGPVYRAVLTGGLHVAVKVLVHEKTLNDQEAAAELEFLGKIKHPNLVPLVGYCLAGDQRIAIYDFMENGTLHHWLHDLPLGTEATEDWSADTW

Protein Length: 98

Fln nts: TGGCAGAAGGAAAATATGGACCTGTCTATAGGGCTGTTTTGACAGGTGGTCTCCACGTTGCTGTTAAGGTCCTGGTTCATGAAAAAACTCTCAATGACCAGGAGGCAGCAGCAGAGCTTGAATTTTTGGGTAAGATAAAGCACCCTAATCTGGTTCCTCTAGTTGGTTATTGTTTAGCAGGTGATCAGAGAATAGCAATTTATGATTTTATGGAGAATGGCACTCTTCATCATTGGCTTCATGATCTTCCGCTGGGTACAGAAGCCACAGAGGATTGGAGTGCAGATACATGGGA

Fln Alignment:

AllPineV4_c46360___EGKYGPVYRAVLTGGLHVAVKVLVHEKTLNDQEAAAELEFLGKIKHPNLVPLVGYCLAGDQRIAIYDFMENGTLHHWLH
C0PRI9_______________QGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain