SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47809

Length: 539 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene47809
CGTCGTGACCTTGGCTGTCACTCAGGCTTCTGGCAAGTAGAGGGCCGATTTTCAATCAGGGTTACATTCGATTGGTAGATGACATAAGGTTTGTGATGAGTCACTTGGAAGTGGCCAAATACGTGGCTCGTGAAAGGCCTGATCTCTCAAGAGTATGGATTCAATTGTTGGTTTTTATGCAAGGTATGGATCCACAAAAGAGAGTGACAAGTATTCACGTGGAGGAGGAAAATGAAAATTGGCTTCCTTTATTTTGCTTAGAATTTCAAATGGCTGCTCCCATACATTCACTTTATGTGACTGGTGCAGCTTCAGTAGATAATGTTAAATGGATAAAAAATAAGATGCTTGTATCAGAAAAGAAGATTCTGATGATGATAGAGATGTAGTTAGGCATGCAAAAATTGGTCGGCTATCTGAGGAAAGTTCAGTTGTTAGAATGATGGGAAGAAGCAGTGGGTCAGATCATGAGATGGAAGAGGCTTGCCCTGAATCTATGAGTACGTTCCAAGTAAGTGACACATTTCCAGTTCCATATG

Ace file of the UniGene sp_v2.0_unigene47809

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	54%
Blast2go	protein	-	-	2.22628e-28	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	2.22628e-28	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	2.22628e-28	69%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	2.22628e-28	69%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	2.22628e-28	69%
Blast2go	regulation of lipid catabolic process	GO:0050994	Biological Process	2.22628e-28	69%
Blast2go	cuticle hydrocarbon biosynthetic process	GO:0006723	Biological Process	2.22628e-28	69%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	2.22628e-28	69%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	2.22628e-28	69%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	2.22628e-28	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3		IPR003455	-	-
Sma3	S-adenosyl-L-methionine-dependent methyltransferase, putative	IPR011610	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TX84

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 1497 aas, your sequence is shorter than subject: 129 - 2048

Fln protein: S*PWLSLRLLASRGPIFNQGYIRLVDDIRFVMSHLEVAKYVARERPDLSRVWIQLLVFMQGMDPQKRVTSIHVEEENENWLPLFCLEFQMAAPIHSLYVTGAASVDNVKWIKNKMLVSEKKILMMIEM*

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTTCTGGCAAGTAGAGGGCCGATTTTCAATCAGGGTTACATTCGATTGGTAGATGACATAAGGTTTGTGATGAGTCACTTGGAAGTGGCCAAATACGTGGCTCGTGAAAGGCCTGATCTCTCAAGAGTATGGATTCAATTGTTGGTTTTTATGCAAGGTATGGATCCACAAAAGAGAGTGACAAGTATTCACGTGGAGGAGGAAAATGAAAATTGGCTTCCTTTATTTTGCTTAGAATTTCAAATGGCTGCTCCCATACATTCACTTTATGTGACTGGTGCAGCTTCAGTAGATAATGTTAAATGGATAAAAAATAAGATGCTTGTATCAGAAAAGAAGATTCTGATGATGATAGAGATGTAGTTAGGCATGCAAAAATTGGTCGGCTATCTGAGGAAAGTTCAGTTGTTAGAATGATGGGAAGAAGCAGTGGGTCAGATCATGAGATGGAAGAGGCTTGCCCTGAATCTATGAGTACGTTCCAAGTAAGTGACACATTTCCAGTTCCATATG

Fln Alignment:

AllPineV4_c46351___RLLASRGPIFNQGYIRLVDDIRFVMSHLEVAKYVARERPDLSRVWIQLLVFMQGMDPQKRVTSIHVEEENENWLPLFCLEFQMAAPIHSLYVTGAAS
A9TX84_______________RISVSKGPVVKRLYFRIIEDIRYVMTHLEVSQYVTQKRPELARAWLHLLAFIQGMFPHRRITSIHVEEETEDWGSAYSLEFQMAC-IHPLFVAGAAA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
354		33		66	0.997452
355	66		33		0.997452
361	66			33	0.997476
366	66			33	0.997464
367	66			33	0.997458
369	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain