SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47474

Length: 565 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene47474
TAAAACCCTCCACTTTTGTCACTCTTCCAGCAGCCTTCACTGGCTTTCGCAGGTTCCCAATAGCGTTGTAGACAGAAATCCCCGGATTGGAATGGTGAGGCTATTCATATATCTACCGATGAAGTTGGTGCTGCTATCTTTCTCAATTTCGCAAAGATTTTTCTTCATTTTGGCAGCACGGGCAGAGGAAATGGTACCCGGAGGGTGCATGTTCATATGTCTAGTGGGTCGTAATTCCAACGACATAAAAGAGCAAGGAGGAATAGGACACATTTCTCATCACATGCAAGCTGCGTTTGAAGAGCTTATCAATCAGGGAATGATTGAGAAGGAGAAAATGGATTCATTCAATCTGCCGCTCTTCTGCCCAAATGTCGAGGAGTTGGAAAGCATAGTGAAGATGGAGAAATCGTTTGAGATTGTGGAGAGAGTGAAGGTGTTCAGTGGGTTACCTTTGCTTGCAATTTCAGAGGTGACAAACAACGATGAGGAGATGTTCGGGAGGATGGTATCAAGCAGTTACAGGGCAGCGTTCGAGAATCTGGTGAGGGCTCAGTTGGGTTCA

Ace file of the UniGene sp_v2.0_unigene47474 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Indole-3-acetate O-methyltransferase 1 n=3 Tax=Arabidopsis RepID=IAMT1_ARATH	-	-	3.0e-22	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	s-adenosyl-l-methionine:salicylic acid carboxyl methyltransferase-like protein	-	-	0.0	57%

Source	GOs	Term	Type	Identity
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	57%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	57%
Blast2go	identical protein binding	GO:0042802	Molecular Function	57%
Blast2go	indole acetic acid carboxyl methyltransferase activity	GO:0051749	Molecular Function	57%
Blast2go	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	57%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0Y6

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 188 - 389

Fln protein: KTLHFCHSSSSLHWLSQVPNSVVDRNPRIGMVRLFIYLPMKLVLLSFSISQRFFFILAARAEEMVPGGCMFICLVGRNSNDIKEQGGIGHISHHMQAAFEELINQGMIEKEKMDSFNLPLFCPNVEELESIVKMEKSFEIVERVKVFSGLPLLAISEVTNNDEEMFGRMVSSSYRAAFENLVRAQLGS

Protein Length: 189

Fln nts: TAAAACCCTCCACTTTTGTCACTCTTCCAGCAGCCTTCACTGGCTTTCGCAGGTTCCCAATAGCGTTGTAGACAGAAATCCCCGGATTGGAATGGTGAGGCTATTCATATATCTACCGATGAAGTTGGTGCTGCTATCTTTCTCAATTTCGCAAAGATTTTTCTTCATTTTGGCAGCACGGGCAGAGGAAATGGTACCCGGAGGGTGCATGTTCATATGTCTAGTGGGTCGTAATTCCAACGACATAAAAGAGCAAGGAGGAATAGGACACATTTCTCATCACATGCAAGCTGCGTTTGAAGAGCTTATCAATCAGGGAATGATTGAGAAGGAGAAAATGGATTCATTCAATCTGCCGCTCTTCTGCCCAAATGTCGAGGAGTTGGAAAGCATAGTGAAGATGGAGAAATCGTTTGAGATTGTGGAGAGAGTGAAGGTGTTCAGTGGGTTACCTTTGCTTGCAATTTCAGAGGTGACAAACAACGATGAGGAGATGTTCGGGAGGATGGTATCAAGCAGTTACAGGGCAGCGTTCGAGAATCTGGTGAGGGCTCAGTTGGGTTCA

Fln Alignment:

AllPineV4_c45974___KTLHFCHSSSSLHWLSQVPNSVVDRN-PRIGMVRLFIYLPMKLVLLSFSISQRFFFILAARAEEMVPGGCMFICLVGRNSNDIKEQGGIGHISHHMQAAFEELINQGMIEKEKMDSFNLPLFCPNVEELESIVKMEKSFEIVERVKVFSGLPLLAISEVTNNDEEMFGRMVSSSYRAAFENLVRAQLGS
A9P0Y6_______________KTLHFCHSASSLHWLSKVPDCVVDRNSPAWNGGAVYISRDEVGAAYLSQFRKDFSAFLEARAEEMVPGGCMFICLTGRNSVDIKEQSGIGHISHYMEAAFEELIKEGMIEKEKMDLFNLPIFCPNVEELESIVKMEKSFEIVESVKLFSGLPLHPFSEVSKGDEEMFGRMVTNSYRAAFENLVRAQLDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain