SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47472

Length: 440 nt

UniGene Fasta

>sp_v2.0_unigene47472
TTTGATGCCATACCTGAGCAAACTGTTGTTTCCTGGACTGCTATGATTGCAGGTTATGCGCAAAATGGTTGTGGCAATGAAGCACTCCACCTTTTTGAAAAAATGCAATTGTCTAGGATAAAGCCAGACCATGTGACCTTTGTTGGCATTCTTTCAGCCTGCAGCCATGTTGGCTTGGTGGATGAAGGCCAACGCTATTTTGTTTCCATGTGTCAAGATTATGGTATTGTACCGAGAATGGAGCACTATGCTTGCATGGTTGACCTATTTGGCCGTGCTGGGCTTCTTGATGAGGCTGACGCTTTTATCAATGAAATGCCATGTAAGCCCAGTGCTTTGGTGTGGCGTACCTTGCTCGGAGCATGCAAAACTCATGGTAGCCCAAAGCTTGGGAACCGTGCTGCAAAATATCTTCTAGAGTTGGAACCACAAGATACATT

Ace file of the UniGene sp_v2.0_unigene47472

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR domain containing protein	-	-	2.0e-06	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	at1g74600-like protein	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 146 - 370

Fln protein: FDAIPEQTVVSWTAMIAGYAQNGCGNEALHLFEKMQLSRIKPDHVTFVGILSACSHVGLVDEGQRYFVSMCQDYGIVPRMEHYACMVDLFGRAGLLDEADAFINEMPCKPSALVWRTLLGACKTHGSPKLGNRAAKYLLELEPQDT

Protein Length: 147

Fln nts: TTTGATGCCATACCTGAGCAAACTGTTGTTTCCTGGACTGCTATGATTGCAGGTTATGCGCAAAATGGTTGTGGCAATGAAGCACTCCACCTTTTTGAAAAAATGCAATTGTCTAGGATAAAGCCAGACCATGTGACCTTTGTTGGCATTCTTTCAGCCTGCAGCCATGTTGGCTTGGTGGATGAAGGCCAACGCTATTTTGTTTCCATGTGTCAAGATTATGGTATTGTACCGAGAATGGAGCACTATGCTTGCATGGTTGACCTATTTGGCCGTGCTGGGCTTCTTGATGAGGCTGACGCTTTTATCAATGAAATGCCATGTAAGCCCAGTGCTTTGGTGTGGCGTACCTTGCTCGGAGCATGCAAAACTCATGGTAGCCCAAAGCTTGGGAACCGTGCTGCAAAATATCTTCTAGAGTTGGAACCACAAGATACATT

Fln Alignment:

AllPineV4_c45971___FDAIPEQTVVSWTAMIAGYAQNGCGNEALHLFEKMQLSRIKPDHVTFVGILSACSHVGLVDEGQRYFVSMCQDYGIVPRMEHYACMVDLFGRAGLLDEADAFINEMPCKPSALVWRTLLGACKTHGSPKLGNRAAKYLLELEPQD
A9P0W0_______________FSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain