SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47383

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene47383
ATTCCAATGCTCCAATCGTCTTACAATTCAGCGCAACAATGACCGAGCAAGACATAATCCTGACTGTCCAAGGCCACATGCATGAAATCAGGACGCAAATGCTCTGAAAAGAGGCTCATCTTTTTGCCCTACGAGGGGTTTAGGCCACTCAATACGAGCTTCTCTTGTAACCGGGGTTCGATTTCGAATACCGGCATGGCACCCACTCAAAGAGCTGAGAAAATGAGGATACACTGCGGGGAAGGAAAAGTAAAGCTTCATTTCAAGCTGGACCATCAAGTGAGTTTTGGGGAGCACCATGCTGTGTTAG

Ace file of the UniGene sp_v2.0_unigene47383 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	unknown [Picea sitchensis]	-	-	1.21406e-34	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbohydrate binding module family 20	IPR002044	-	0.0	-
Sma3	Immunoglobulin-like fold	IPR013783	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX6

Fln msg: Distance to subject end: 217 aas, atg_distance in limit (1-15): atg_distance = 7, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 76 - 328

Fln protein: MKSGRKCSEKRLIFLPYEGFRPLNTSFSCNRGSISNTGMAPTQRAEKMRIHCGEGKVKLHFKLDHQVSFGEHHAVL

Protein Length: 77

Fln nts: ATTCCAATGCTCCAATCGTCTTACAATTCAGCGCAACAATGACCGAGCAAGACATAATCCTGACTGTCCAAGGCCACATGC_-_ATGAAATCAGGACGCAAATGCTCTGAAAAGAGGCTCATCTTTTTGCCCTACGAGGGGTTTAGGCCACTCAATACGAGCTTCTCTTGTAACCGGGGTTCGATTTCGAATACCGGCATGGCACCCACTCAAAGAGCTGAGAAAATGAGGATACACTGCGGGGAAGGAAAAGTAAAGCTTCATTTCAAGCTGGACCATCAAGTGAGTTTTGGGGAGCACCATGCTGTGTTAG

Fln Alignment:

AllPineV4_c45870___KATCMKSGRKCSEKRLIFLPYEGFRPLNTSFSCNRGSI--SNTGMAPTQRAEKMRIHCGEGKVKLHFKLDHQVSFGEHHAVL
B8LPX6_______________KVTCMKLGRKYSEKRLIFLPYEGFRPLNTSFSANRASILCSNTGIASPHRDEKMGIRCGERKVNLYFKLDHQVSFGEHHAVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain