SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene47128

Length: 449 nt

UniGene Fasta

>sp_v2.0_unigene47128
ACATAACGGGACAAATTCCGCCAGAACTGGCTAACCTGACTCAAATTTGGGATCTGAACTTCGCACGAAACTATTTAACAGGATCAATACCTGCCTTCTTGGGTGACCTCACAAAGATGCTGTATCTGTCCGTTGGAGCAAATAACTTATCGGGCCCTGTTCCAAAGGATCTTGGAAATCTTCGAAGTCTGATTTCATTGAGCTTTTCTGCAAACAATCTTAATGGGTCACTTCCGCCAGAGCTTGGGAGCCTAACAGCATTGGAACAAATGTACATTAGTAGTTCAGGAGTAAGTGGAGAGATACCATCCTCCTTTCGAAATCTTCAAAGCTTGAAAATTCTATGGGCTGCTAATAATCATTTCACTGGAGGAATACCAGACTTCATTGGAAGTTGGAAGAACCTTATTGATCTGAGGCTACAGGGGAATGCTTTCAAGGGTCCAATT

Ace file of the UniGene sp_v2.0_unigene47128

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g56130-like	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rapid ALkalinization Factor	IPR008801	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NS02

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 149 - 315

Fln protein: ITGQIPPELANLTQIWDLNFARNYLTGSIPAFLGDLTKMLYLSVGANNLSGPVPKDLGNLRSLISLSFSANNLNGSLPPELGSLTALEQMYISSSGVSGEIPSSFRNLQSLKILWAANNHFTGGIPDFIGSWKNLIDLRLQGNAFKGPI

Protein Length: 150

Fln nts: ACATAACGGGACAAATTCCGCCAGAACTGGCTAACCTGACTCAAATTTGGGATCTGAACTTCGCACGAAACTATTTAACAGGATCAATACCTGCCTTCTTGGGTGACCTCACAAAGATGCTGTATCTGTCCGTTGGAGCAAATAACTTATCGGGCCCTGTTCCAAAGGATCTTGGAAATCTTCGAAGTCTGATTTCATTGAGCTTTTCTGCAAACAATCTTAATGGGTCACTTCCGCCAGAGCTTGGGAGCCTAACAGCATTGGAACAAATGTACATTAGTAGTTCAGGAGTAAGTGGAGAGATACCATCCTCCTTTCGAAATCTTCAAAGCTTGAAAATTCTATGGGCTGCTAATAATCATTTCACTGGAGGAATACCAGACTTCATTGGAAGTTGGAAGAACCTTATTGATCTGAGGCTACAGGGGAATGCTTTCAAGGGTCCAATT

Fln Alignment:

AllPineV4_c45566___ITGQIPPELANLTQIWDLNFARNYLTGSIPAFLGDLTKMLYLSVGANNLSGPVPKDLGNLRSLISLSFSANNLNGSLPPELGSLTALEQMYXXXXXXXXXXXXXFRNLQSLKILWAANNHFTGGIPDFIGS-WKNLIDLRLQGNAFKGPI
A9NS02_______________MTGIIPPEMANLTYLENIDLRYNLLHGSIPASLGSLTRMQYLSFGINNLSGEIPKEFGKLTNMISLSLDQNDLSGMIPPELGNLTNLEKLYIRSNQFSGEIPTTFSNLKKMRLFWASSNNFTGKIPDFIGNYWSQLENLKLEGTSFEGPI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain