SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46905

Length: 344 nt

UniGene Fasta

>sp_v2.0_unigene46905
TGTATGCCAGATCCGGAAGCATAGAAGATGCACGATTTTTTTTTGACATAAATGACCGAAAGAGATGTCGTTGCCTGGACTGCAATGATTGTAGGACATGCACAGCATGGGGAAGGTGAGAAGGCTCTCGAACTCTTTGAACAAATGCAATCTGAAGGAATCAAGCCTAACCACATAACATTTGTTGGTGTTCTCTCTGCGTGCAGTCACGCAGGCCTAATTAATGAAGGTTTGCAATACTTTGAGTCCATGAATAGAGATCACAGCAACGTGCCAACTGTGGACCATTATGCCTGCATGGTAGACATTCTTGGCCGTGCTGGACGCCAGGATGAGGCAGAGAA

Ace file of the UniGene sp_v2.0_unigene46905

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SHZ8.1\|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb\|AAD25817.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC07259.1\| pentatricopeptide repe	-	-	1.0e-28	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	pentatricopeptide repeat-containing protein	-	-	3.05796e-35	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 214 aas, your sequence is shorter than subject: 97 - 312

Fln protein: MTERDVVAWTAMIVGHAQHGEGEKALELFEQMQSEGIKPNHITFVGVLSACSHAGLINEGLQYFESMNRDHSNVPTVDHYACMVDILGRAGRQDEAE

Protein Length: 98

Fln nts: TGTATGCCAGATCCGGAAGCATAGAAGATGCACGATTTTTTTTTGACATAA_-_ATGACCGAAAGAGATGTCGTTGCCTGGACTGCAATGATTGTAGGACATGCACAGCATGGGGAAGGTGAGAAGGCTCTCGAACTCTTTGAACAAATGCAATCTGAAGGAATCAAGCCTAACCACATAACATTTGTTGGTGTTCTCTCTGCGTGCAGTCACGCAGGCCTAATTAATGAAGGTTTGCAATACTTTGAGTCCATGAATAGAGATCACAGCAACGTGCCAACTGTGGACCATTATGCCTGCATGGTAGACATTCTTGGCCGTGCTGGACGCCAGGATGAGGCAGAGAA

Fln Alignment:

AllPineV4_c45290___MTERDVVAWTAMIVGHAQHGEGEKALELFEQMQSEGIKPNHITFVGVLSACSHAGLINEGLQYFESMNRDHSNVPTVDHYACMVDILGRAGRQDEA
D5ADG9_______________MSNKNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain