SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46731

Length: 451 nt

UniGene Fasta

>sp_v2.0_unigene46731
TTTCAATTCACCGGAGCATGTAATTTCATCTCATCGTCCGAAGCGTGCAAGGGAAGGCTTTCTGTGCCCGCATCTCGCCCATTTTCCCTCCACGCGGGAATTGTATTTTACCCTGTTTATTGGCTTATCCGCATATTGCATTTCCTGTAACCTTCGGATCCTATATTTCAAATGAAAAGAGCACTGCTACCAGCATCTAATTCTTCATCCAAGAGTGGAAGTGGAAATTTGAGTTATGGCAACCAAAAGGAATGGCTATCAAAGCTTTTGCAGAAACATTTTGGACATTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAGACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGTGAAAGTCCTTGTGCTATCAAATTCCTGCACTTGCAAAGGCTGGAATCGTTCTTGTTGTGTCACCACTGATAGCATTGAT

Ace file of the UniGene sp_v2.0_unigene46731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana] sp\|Q9FT72.1\|RQL3_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 3; AltName: Full=RecQ-like protein 3; Short=AtRecQ3; Short=AtRecQl3 emb\|CAC14867.1\| DNA Helicase [Arabidopsis thaliana] gb\|AE	-	-	3.0e-19	71%
FL-Next	sp=ATP-dependent DNA helicase Q-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Blast2go	atp-dependent dna helicase	-	-	4.99416e-19	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA strand renaturation	GO:0000733	Biological Process	4.99416e-19	83%
Blast2go	DNA recombination	GO:0006310	Biological Process	4.99416e-19	83%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	4.99416e-19	83%
Blast2go	3'-5' DNA helicase activity	GO:0043138	Molecular Function	4.99416e-19	83%
Blast2go	DNA strand annealing activity	GO:0000739	Molecular Function	4.99416e-19	83%
Blast2go	four-way junction helicase activity	GO:0009378	Molecular Function	4.99416e-19	83%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018329	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FT72

Fln msg: Separated hits, possible frame ERROR between 372 and 375, Distance to subject end: 624 aas, your sequence is shorter than subject: 93 - 713

Fln protein: MKRALLPASNSSSKSGSGNLSYGNQKEWLSKLLQKHFGHSNFRGRQLEAIETVLAGKDCFCLMPTGxxKSLCYQIPALAKAGIVLVVSPLIAL

Protein Length: 94

Fln nts: TTTCAATTCACCGGAGCATGTAATTTCATCTCATCGTCCGAAGCGTGCAAGGGAAGGCTTTCTGTGCCCGCATCTCGCCCATTTTCCCTCCACGCGGGAATTGTATTTTACCCTGTTTATTGGCTTATCCGCATATTGCATTTCCTGTAACCTTCGGATCCTATATTTCAA_-_ATGAAAAGAGCACTGCTACCAGCATCTAATTCTTCATCCAAGAGTGGAAGTGGAAATTTGAGTTATGGCAACCAAAAGGAATGGCTATCAAAGCTTTTGCAGAAACATTTTGGACATTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAGACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGxxxAAAGTCCTTGTGCTATCAAATTCCTGCACTTGCAAAGGCTGGAATCGTTCTTGTTGTGTCACCACTGATAGCATTGAT

Fln Alignment:

AllPineV4_c45079___KEWLSKLLQKHFGHSNFRGRQLEAIETVLAGKDCFCLMPTGGxKSLCYQIPALAKAGIVLVVSPLIAL
Q9FT72_______________KEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGxKSICYQIPALAKPGIVLVVSPLIAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain