SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46706

Length: 323 nt

UniGene Fasta

>sp_v2.0_unigene46706
TTTCAAGGTTGATTTTGCCATTTGACACACATGTGACCACAGAATTAGTAGGCACTCTGGGATACATTCCCCCTGAGTATGGACAAGCATGGGTAGCTACTCTCAGAGGTGATGTCTACAGTTTGGGGTTGTTATTTTGGAGCTGCTCACTAGAAGGCGGCCAGTTGAAGTCTCCAAGTCAATGATAAGCAGTGATTTGGTGACATGGGTGCAGCAAATGAGGTCTGAAGGTAAGCAGGAGGAGGTCTTTGATATTTTGATCCGGGGCAAAGGTTATGAGGATCAAATGTTGCAGGTACTTGATATTGCTTGCATGTGTACTA

Ace file of the UniGene sp_v2.0_unigene46706

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tyrosine-sulfated glycopeptide receptor 1 [Arabidopsis thaliana] sp\|Q9C7S5.1\|PSYR1_ARATH RecName: Full=Tyrosine-sulfated glycopeptide receptor 1 gb\|AAG51803.1\|AC067754_19 leucine-rich receptor-like protein kinase, putative; 84911-81624 [Arabidopsis thalia	-	-	7.0e-35	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	tyrosine-sulfated glycopeptide receptor 1-like	-	-	1.42333e-40	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	1.42333e-40	87%
Blast2go	cellular process	GO:0009987	Biological Process	1.42333e-40	87%
Blast2go	metabolic process	GO:0008152	Biological Process	1.42333e-40	87%
Blast2go	kinase activity	GO:0016301	Molecular Function	1.42333e-40	87%
Blast2go	peptide receptor activity	GO:0001653	Molecular Function	1.42333e-40	87%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	1.42333e-40	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 55 aas, your sequence is shorter than subject: 61 - 613

Fln protein: SRLILPFDTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSLGLLFWSCSLEGGQLKSPSQ*

Protein Length: 62

Fln nts: TTTCAAGGTTGATTTTGCCATTTGACACACATGTGACCACAGAATTAGTAGGCACTCTGGGATACATTCCCCCTGAGTATGGACAAGCATGGGTAGCTACTCTCAGAGGTGATGTCTACAGTTTGGGGTTGTTATTTTGGAGCTGCTCACTAGAAGGCGGCCAGTTGAAGTCTCCAAGTCAATGATAAGCAGTGATTTGGTGACATGGGTGCAGCAAATGAGGTCTGAAGGTAAGCAGGAGGAGGTCTTTGATATTTTGATCCGGGGCAAAGGTTATGAGGATCAAATGTTGCAGGTACTTGATATTGCTTGCATGTGTACTA

Fln Alignment:

AllPineV4_c45046___SRLILPFDTHVTTEL---VGTLGYIPPEYGQAWVATLRGDVYSLGLL
B8LM41_______________ARLMNPVDTHLSTFINGDFGDLGYVAPEYMRTLVATLKGDVYSFGVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain