SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46552

Length: 512 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene46552
ACGAAGTTCATGCATTCCGTGTGGGAGAAAAGGTGCACCAGCAATCTAAGGAGATATACGCAATGTTAGAGACATTGGCTGCGCAGATGGAGGCAGCAGGGTACGTGCCTAACACAAACTTTGTGTTGCATGATGTTGAGGAGGAACTGAAAGAAGATATACTCTACAGTCACAGTGAGAAACTGGCTATTGCTTTTGGGCTTCTCAACACAAGTCCTGGAACCTCTATCCGCATCACCAAGAACCTTCGAGTATGTGGTGATTGCCACACTGCCACAAAGTTCATATCCAAGATTACTATGCGAGACATAATCATGAGGGATGCTAACCGTTTCCATCATTTCAAAAATGGCCTGTGTTCATGTGGGGATTATTGGTGATGCATGGTAAAACATGTAACGAACATTAACTTGGCCATTAACTTTTATCACTTCCCCAAGTTCCAACCTCTATGCATTATTATGATTTACAGTACAATATTTTATATCAGATTCCGGGTTCAATAATTTAAT

Ace file of the UniGene sp_v2.0_unigene46552

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	pentatricopeptide repeat protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: your sequence is shorter than subject: 126 - 312

Fln protein: EVHAFRVGEKVHQQSKEIYAMLETLAAQMEAAGYVPNTNFVLHDVEEELKEDILYSHSEKLAIAFGLLNTSPGTSIRITKNLRVCGDCHTATKFISKITMRDIIMRDANRFHHFKNGLCSCGDYW*

Protein Length: 127

Fln nts: ACGAAGTTCATGCATTCCGTGTGGGAGAAAAGGTGCACCAGCAATCTAAGGAGATATACGCAATGTTAGAGACATTGGCTGCGCAGATGGAGGCAGCAGGGTAtGTGCCTAACACAAACTTTGTGTTGCATGATGTTGAGGAGGAACTGAAAGAAGATATACTCTACAGTCACAGTGAGAAACTGGCTATTGCTTTTGGGCTTCTCAACACAAGTCCTGGAACCTCTATCCGCATCACCAAGAACCTTCGAGTATGTGGTGATTGCCACACTGCCACAAAGTTCATATCCAAGATTACTATGCGAGACATAATCATGAGGGATGCTAACCGTTTCCATCATTTCAAAAATGGCCTGTGTTCATGTGGGGATTATTGGTGA___TGCATGGTAAAACATGTAACGAACATTAACTTGGCCATTAACTTTTATCACTTCCCCAAGTTCCAACCTCTATGCATTATTATGATTTACAGTACAATATTTTATATCAGATTCCGGGTTCAATAATTTAAT

Fln Alignment:

AllPineV4_c44859___EVHAFRVGEKVHQQSKEIYAMLETLAAQMEAAGYVPNTNFVLHDVEEELKEDILYSHSEKLAIAFGLLNTSPGTSIRITKNLRVCGDCHTATKFISKITMRDIIMRDANRFHHFKNGLCSCGDYW
D5ADG9_______________KLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENMLFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain