SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46145

Length: 427 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene46145
CGTCGTGACCTTGGCTATCACTCAGTTGACAGAGTTGAGCATATGTGAATGTGGAATACAATACTTACCACCAGGTGTCATGAAGCTGAACAATCTGAAGCATTTAAGGATATGTGAATGTCCTTTACGGGAACTTCCATTTAAAAAGGCGGATGAAGGAGGAGAAGGAGATACGGCATTATTACCAGAATCGTCCAGAGCAAAAAGAGTGAAGTTGAGCGAATTGGATTCTTCCGCTGAGAAAGGTATGATGGTTAAGCTAGAGAAGTTACAGCTGTAAAGACAGAAATACGGGAGATATCCTTTCCGGAAGGTGTTTGTCCCAACCTTCGGTTTCTGCACATCTCTTGTTGTAGTGATCTAGTGCAGGTTGGGGCATTGCCCGTAACACTCAAAGAAATGGGCTTGATTTCTTGTAATGCATTGA

Ace file of the UniGene sp_v2.0_unigene46145 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	3.0e-07	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	tir-nbs-lrr protein	-	-	6.03328e-16	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP91

Fln msg: Separated hits, possible frame ERROR between 277 and 283, Distance to subject end: 274 aas, your sequence is shorter than subject: 142 - 583

Fln protein: VVTLAITQLTELSICECGIQYLPPGVMKLNNLKHLRICECPLRELPFKKADEGGEGDTALLPESSRAKRVKLSELDSSAEKGMMVKLEKLQxxxTEIREISFPEGVCPNLRFLHISCCSDLVQVGALPVTLKEMGLISCNAL

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTATCACTCAGTTGACAGAGTTGAGCATATGTGAATGTGGAATACAATACTTACCACCAGGTGTCATGAAGCTGAACAATCTGAAGCATTTAAGGATATGTGAATGTCCTTTACGGGAACTTCCATTTAAAAAGGCGGATGAAGGAGGAGAAGGAGATACGGCATTATTACCAGAATCGTCCAGAGCAAAAAGAGTGAAGTTGAGCGAATTGGATTCTTCCGCTGAGAAAGGTATGATGGTTAAGCTAGAGAAGTTACAGCTxxxxxxGACAGAAATACGGGAGATATCCTTTCCGGAAGGTGTTTGTCCCAACCTTCGGTTTCTGCACATCTCTTGTTGTAGTGATCTAGTGCAGGTTGGGGCATTGCCCGTAACACTCAAAGAAATGGGCTTGATTTCTTGTAATGCATTGA

Fln Alignment:

AllPineV4_c44378___ITQLTELSICECG-IQYLPPGVMKLNNLKHLRICECPLRELPFKKADEGGEGDTALLPESSRAKRVKLSELDSSAEKGMMVKLEKLQLxxTEIREISFPEGVCPNLRFLHISCCSDLVQVGALPVTLKEMGLISCNAL
B8LP91_______________LKQLTDLTI-DCGRIEYLPAGVIEVKSLKILKVIRCPLRKVPFGRV-ENVEGKDA-SPDQSGGKLLNQS-------GRMLLRLKQLDLxxTRITELSFAEGICPNLRQLDISDCLELVEVGALPQTLISLDLNGCYAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain