SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46139

Length: 547 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene46139
ACCAATGCCAAAGAATGGGGAAACCGACTCAAAGGGATGAGATGCCCCTCCAACCTCAAGTGAATCTTGAGCCATTTGGGAAGTGGGGTGTGGACTTTGTGGGTCCCATCAACCCTCCTTCGAGGCAAAGGTCTTATATCATTGTGTGTACTGACTACCTGACCAAATGGGCAGAGACTAAGGCAATCAAAACAACAACAGAGGACAAGGTGGCTGAGTTCCTAAGAGAGAACATCTTCTACAAGTTTGGCTACCCCAGAGAGCTAGTCACTGATCAAGGGAGTCAGTTCACATCCAACCTGGTTGAAGATTTTCTAGATCATCACAAGATCAAGCATAGAACTTCCACCCCCTATCATCCTCAAGCGAATGGGCAGGTGGAAGTCACTAACAGAGCACTAGAAGGGATCTTGACTAAGGTGGTGAGTAGTAGAAGAAAGGACTGAGAAGATCACCTGGTTGAGGCCACATGGGCTTACAACACAACATGGAAGACCACCACTGGCTTCACACCTTTTGAGCTAGTCTATGGGAAGAAAGCTTTGTT

Ace file of the UniGene sp_v2.0_unigene46139

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF	-	-	6.0e-36	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	45%
Blast2go	uncharacterized protein loc100777486	-	-	2.94034e-41	65%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Carlavirus nucleic acid-binding protein	IPR002568	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Arabidopsis retrotransposon Orf1	IPR004312	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Ribosomal protein L33, conserved site	IPR018264	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C2U7

Fln msg: Distance to subject end: 143 aas, your sequence is shorter than subject: 181 - 374

Fln protein: QCQRMGKPTQRDEMPLQPQVNLEPFGKWGVDFVGPINPPSRQRSYIIVCTDYLTKWAETKAIKTTTEDKVAEFLRENIFYKFGYPRELVTDQGSQFTSNLVEDFLDHHKIKHRTSTPYHPQANGQVEVTNRALEGILTKVVSSRRKD*EDHLVEATWAYNTTWKTTTGFTPFELVYGKKAL

Protein Length: 182

Fln nts: ACCAATGCCAAAGAATGGGGAAACCGACTCAAAGGGATGAGATGCCCCTCCAACCTCAAGTGAATCTTGAGCCATTTGGGAAGTGGGGTGTGGACTTTGTGGGTCCCATCAACCCTCCTTCGAGGCAAAGGTCTTATATCATTGTGTGTACTGACTACCTGACCAAATGGGCAGAGACTAAGGCAATCAAAACAACAACAGAGGACAAGGTGGCTGAGTTCCTAAGAGAGAACATCTTCTACAAGTTTGGCTACCCCAGAGAGCTAGTCACTGATCAAGGGAGTCAGTTCACATCCAACCTGGTTGAAGATTTTCTAGATCATCACAAGATCAAGCATAGAACTTCCACCCCCTATCATCCTCAAGCGAATGGGCAGGTGGAAGTCACTAACAGAGCACTAGAAGGGATCTTGACTAAGGTGGTGAGTAGTAGAAGAAAGGACTGAGAAGATCACCTGGTTGAGGCCACATGGGCTTACAACACAACATGGAAGACCACCACTGGCTTCACACCTTTTGAGCTAGTCTATGGGAAGAAAGCTTTGTT

Fln Alignment:

AllPineV4_c44367___QCQRMGKPTQRDEMPLQPQVNLEPFGKWGVDFVGPINPPSRQRSYIIVCTDYLTKWAETKAIKTTTEDKVAEFLRENIFYKFGYPRELVTDQGSQFTSNLVEDFLDHHKIKHRTSTPYHPQANGQVEVTNRALEGILTKVVSSRRKD*EDHLVEXXXXXXXXXXXXXXXXPFELVYGK
A5C2U7_______________RCQRLGKLTKRNQMPMNPILIVELFDVWGIDFMGPF-PMSFGNSYILVGVDYVSKWVEAIPCKQNDHRVVLKFLKKNIFSRFGVPKAIISDGGAHFCNKPFEALLFKYGVKHKVATPYHPQTSGQVELANREIKNILMKVVNSNRKDWSIRLHDSLWAYRTAYKTILGMSPYRLVYGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain