SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene46083

Length: 548 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene46083
CCTGAGAAGAATCCAGGTCTGTGAGTTTCAAATGGATCTATGTAGAATCATTTAAGTGGGAGTCCCCAACTCCAGCTCATGAACATATCTCACCTAAATTCACCCTCTGGCAACTAATGTTCTAGATAATCTCATTTATGGATTCGTAGGCTTGTAGAACTGAATTTCTGCATTGATAGTTTGGGTGAATGTAAAGATGGATAGGCTTGTTCAAGTGCATGAAAATGAGGTGAGGATAGATTTTGAGGTGGGATGCAAATGTAGGACAACAATTCACCTGAAGAGTTTGATCGACACCATGCCTGTTGCATTCAAGGTGCAGACTTCTACTCCTGATAAATTTTTAGTCAAACCTCCCAATGGGTTCATATCCCCACTGGGTGATTTCTCTTTTGAAATAATATTAAAGCCAATGCAGGATCTCCCGGAGGAGTTCCCTCGTTCAAAAGATAGATTTCTTATAAAGACTGCATTGGCACCTGACTGCAAAATGGATGGCAATGACTTACCAGATAAGGTGCCCAATGACTGGTTTGCATCGCGGAAAA

Ace file of the UniGene sp_v2.0_unigene46083 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative vesicle-associated m (ISS) [Ostreococcus tauri] emb\|CAL52969.1\| putative vesicle-associated m (ISS) [Ostreococcus tauri]	-	-	2.0e-08	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	ankyrin repeat domain-containing protein	-	-	1.59292e-31	63%

Source	InterPros	Term	Type	Identity
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	PapD-like	IPR008962	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT66

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 117 - 241

Fln protein: MDRLVQVHENEVRIDFEVGCKCRTTIHLKSLIDTMPVAFKVQTSTPDKFLVKPPNGFISPLGDFSFEIILKPMQDLPEEFPRSKDRFLIKTALAPDCKMDGNDLPDKVPNDWFASRK

Protein Length: 118

Fln nts: CCTGAGAAGAATCCAGGTCTGTGAGTTTCAAATGGATCTATGTAGAATCATTTAAGTGGGAGTCCCCAACTCCAGCTCATGAACATATCTCACCTAAATTCACCCTCTGGCAACTAATGTTCTAGATAATCTCATTTATGGATTCGTAGGCTTGTAGAACTGAATTTCTGCATTGATAGTTTGGGTGAATGTAAAG_-_ATGGATAGGCTTGTTCAAGTGCATGAAAATGAGGTGAGGATAGATTTTGAGGTGGGATGCAAATGTAGGACAACAATTCACCTGAAGAGTTTGATCGACACCATGCCTGTTGCATTCAAGGTGCAGACTTCTACTCCTGATAAATTTTTAGTCAAACCTCCCAATGGGTTCATATCCCCACTGGGTGATTTCTCTTTTGAAATAATATTAAAGCCAATGCAGGATCTCCCGGAGGAGTTCCCTCGTTCAAAAGATAGATTTCTTATAAAGACTGCATTGGCACCTGACTGCAAAATGGATGGCAATGACTTACCAGATAAGGTGCCCAATGACTGGTTTGCATCGCGGAAAA

Fln Alignment:

AllPineV4_c44302___LVQVHENEVRIDFEVGCKCRTTIHLKSLIDTMPVAFKVQTSTPDKFLVKPPNGFISPLGDFSFEIILKPMQDLPEEFPRSKDRFLIKTALAP
A9NT66_______________LLSVQPNELKFPFELKKQISCSLRLVNLTEDH-VAFKVKTTSPKKYCVRPNTGVVLPQSSIDVIVTMQAQREAPPDL-QCKDKFLIQSVKAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain