SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45992

Length: 252 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45992
AATGTATATCCCAAGTATTCCACATGGTTGTCGAGTAAAGGTTTTCTTCAAAACTCCAGAAGGTCCTCTTGAACGTGTTCCAGCTTGGGCTACATATGTCTTGCCTGATCCAGGTGGTAAACGAGCGAGTGCAATTTACTGGGAGCCACCTCCCGAAAACGTTTATCAGTGGAAAAACAAGCGCCCGAAAGTACCATCATCTCTACGCATCTACGAGTGCCATGTTGGCATAAGTGGTTCAGAACCCAAAAT

Ace file of the UniGene sp_v2.0_unigene45992 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GJH0_POPTR	-	-	8.0e-33	74%
FL-Next	sp=1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic; Zea mays (Maize).	-	-	0.0	50%
Blast2go	alpha amylase family protein	-	-	3.89095e-39	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	3.89095e-39	80%
Blast2go	post-embryonic development	GO:0009791	Biological Process	3.89095e-39	80%
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.89095e-39	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.89095e-39	80%

Source	InterPros	Term	Type	Identity
Sma3	Extradiol ring-cleavage dioxygenase, class I /II	IPR000486	-	-
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Alpha-amylase, C-terminal all beta	IPR006048	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q08047

Fln msg: Distance to subject end: 496 aas, your sequence is shorter than subject: 83 - 799

Fln protein: MYIPSIPHGCRVKVFFKTPEGPLERVPAWATYVLPDPGGKRASAIYWEPPPENVYQWKNKRPKVPSSLRIYECHVGISGSEPK

Protein Length: 84

Fln nts: AATGTATATCCCAAGTATTCCACATGGTTGTCGAGTAAAGGTTTTCTTCAAAACTCCAGAAGGTCCTCTTGAACGTGTTCCAGCTTGGGCTACATATGTCTTGCCTGATCCAGGTGGTAAACGAGCGAGTGCAATTTACTGGGAGCCACCTCCCGAAAACGTTTATCAGTGGAAAAACAAGCGCCCGAAAGTACCATCATCTCTACGCATCTACGAGTGCCATGTTGGCATAAGTGGTTCAGAACCCAAAAT

Fln Alignment:

AllPineV4_c44190___IPHGCRVKVFFKTPEGPLERVPAWATYVLPDPGGKRASAIYWEPPPENVYQWKNKRPKVPSSLRIYECHVGISGSEPK
Q08047_______________IPHGSRVKVRMDTPSGIKDSIPAWIKYSVQAPGEIPYDGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPEPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain