SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45928

Length: 456 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45928
CGTCGTGACCTTGGCTGTCACTCAAATCAGATTATTTTCATGTATCCTCAAACATCAAATTCGGACTCATCTCCCTTCTCTTCATTACCGCATGGTCCTTCTGGCATCTGCATTGTAAGAGCAGTCTTGCCAATTGTTCTTATTTTTCTGGCCATACAAGTAGGGTTAAGTTGGTATGTTTTTAAAAGAAGAAGAAGAACGCAGAGGATGCTTTCAGCCAAGCATGGCTTGATGGATCAAAATTGTAGAGTCCCCATCAGGTTGACTTACTTAGAAATACAAGATTTGACAGAGAACTTTAGCCACAAGCTTAGTCCAACTGTTTTCAAGGGAACTCTGTCCAGCATGAGACCTGTGATAATCAAGCGACTAGATGTTGAAACTACAGAGAAGGAGTTTCGGAAGGTATTGTCCATTATAGGAAGCACACGCCACAAGAACTTGGTGTCGTTGCAT

Ace file of the UniGene sp_v2.0_unigene45928 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase n=2 Tax=Prunus cerasifera RepID=E6YCZ1_9ROSA	-	-	5.0e-15	34%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	34%
Blast2go	protein	-	-	9.92033e-17	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	9.92033e-17	56%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.92033e-17	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XID3

Fln msg: Distance to subject end: 286 aas, your sequence is shorter than subject: 152 - 829

Fln protein: RRDLGCHSNQIIFMYPQTSNSDSSPFSSLPHGPSGICIVRAVLPIVLIFLAIQVGLSWYVFKRRRRTQRMLSAKHGLMDQNCRVPIRLTYLEIQDLTENFSHKLSPTVFKGTLSSMRPVIIKRLDVETTEKEFRKVLSIIGSTRHKNLVSLH

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCAGATTATTTTCATGTATCCTCAAACATCAAATTCGGACTCATCTCCCTTCTCTTCATTACCGCATGGTCCTTCTGGCATCTGCATTGTAAGAGCAGTCTTGCCAATTGTTCTTATTTTTCTGGCCATACAAGTAGGGTTAAGTTGGTATGTTTTTAAAAGAAGAAGAAGAACGCAGAGGATGCTTTCAGCCAAGCATGGCTTGATGGATCAAAATTGTAGAGTCCCCATCAGGTTGACTTACTTAGAAATACAAGATTTGACAGAGAACTTTAGCCACAAGCTTAGTCCAACTGTTTTCAAGGGAACTCTGTCCAGCATGAGACCTGTGATAATCAAGCGACTAGATGTTGAAACTACAGAGAAGGAGTTTCGGAAGGTATTGTCCATTATAGGAAGCACACGCCACAAGAACTTGGTGTCGTTGCAT

Fln Alignment:

AllPineV4_c44113___AVLPIVLIFLAIQVGLSWYVFKRRRRTQRMLSAKHGLMDQNCRVPIRLTYLEIQDLTENFSHKLSP----TVFKGTLSSMRPVIIKRLD-VETTEKEFRKVLSIIGSTRHKNLVSL
Q9XID3_______________AVIAGLLGLVAVEIGLWWCCCRKNPRFGT-LSSHYTLLEYASGAPVQFTYKELQRCTKSFKEKLGAGGFGTVYRGVLTNRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRL

SSRs (tot: 1)

Start position	End position	Sequence	Length
258	271	TTC TTC TTC TTC TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain