SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45880

Length: 317 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45880
TCTTCATGCTTCTCTTCCACCTGAAATGCAGGTTCGAGTGTTTACGCCAGCACCTCCAAATTGTAGACGCATTATTGTTGCAACTAACATTGCAGAAACATCCCTTACTGTAGATGGTGTTGTATATGTCATTGATCCAGGCTTTGTGAAGCAACGCCAATACAACCCTGGGACTGGGATGTACTCTCTTGATGTGGTGCAGATTAGTCGAGTGCAGGCTAATCAACGAGCAGGCAGAGCTGGAGGACACGTCCTGGAAAATGTTATAGACTCTATCCATTATCTGTGTATGAGCATGAATTGCTTGAGGCAACGAT

Ace file of the UniGene sp_v2.0_unigene45880 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C7G2_ARATH	-	-	8.99998e-41	85%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	atp-dependent rna	-	-	1.32927e-41	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	1.32927e-41	89%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate kinase	IPR000850	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Adenylate kinase, subfamily	IPR006259	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Adenylate kinase, active site lid domain	IPR007862	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38953

Fln msg: Overlapping hits, possible frame ERROR between 244 and 244, Distance to subject end: 301 aas, your sequence is shorter than subject: 105 - 1168

Fln protein: LHASLPPEMQVRVFTPAPPNCRRIIVATNIAETSLTVDGVVYVIDPGFVKQRQYNPGTGMYSLDVVQISRVQANQRAGRAxxTRPGKCYRLYPLSVYEHELLEAT

Protein Length: 106

Fln nts: TCTTCATGCTTCTCTTCCACCTGAAATGCAGGTTCGAGTGTTTACGCCAGCACCTCCAAATTGTAGACGCATTATTGTTGCAACTAACATTGCAGAAACATCCCTTACTGTAGATGGTGTTGTATATGTCATTGATCCAGGCTTTGTGAAGCAACGCCAATACAACCCTGGGACTGGGATGTACTCTCTTGATGTGGTGCAGATTAGTCGAGTGCAGGCTAATCAACGAGCAGGCAGAGCTxxxxxxACACGTCCTGGAAAATGTTATAGACTCTATCCATTATCTGTGTATGAGCATGAATTGCTTGAGGCAACGAT

Fln Alignment:

AllPineV4_c44055___LHASLPPEMQVRVFTPAPPNCRRIIVATNIAETSLTVDGVVYVIDPGFVKQRQYNPGTGMYSLDVVQISRVQANQRAGRAGRTRPGKCYRLYPLSVYEHEL
Q38953_______________VYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain