SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45878

Length: 407 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45878
TTCCATCGAAGCTTTGCATCTTATTATACAGTTTATCAGATCATACATTTCCAGAGCTCAGTATCAATGGCAAATCTAACTAAATCCGCTCAAGGTTCTGCTGCTTCCTCTTCCATGGCCTCCTCTTCTGCCACGACTTCTTGTACTCCTTGGGATCTCTTTATTAATCACCGCGGTGCGGATGGTGAAAAGGCCGCCAGACATCTGTACAGGGGCCTTATTCCCCATGGATTAATGAGAGTCTTTTTCGACAAGGAAGAGATGGAGAAGGGACAAAACATTTCTCGCCAGTTAACAGAGGCTATCGGTGGTGCGTCTGTTCACATTGCAATCTTTTCACCAAGGTATGCCGAATCTTGGTGGTGCCTGGATGAACTTGTGCTGATGGTAGAGTCAGGGAAAGCCAT

Ace file of the UniGene sp_v2.0_unigene45878 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	2.0e-17	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	tir-nbs-lrr resistance protein	-	-	1.25395e-23	66%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ96

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 113 - 166

Fln protein: MANLTKSAQGSAASSSMASSSATTSCTPWDLFINHRGADGEKAARHLYRGLIPHGLMRVFFDKEEMEKGQNISRQLTEAIGGASVHIAIFSPRYAESWWCLDELVLMVESGKA

Protein Length: 114

Fln nts: TTCCATCGAAGCTTTGCATCTTATTATACAGTTTATCAGATCATACATTTCCAGAGCTCAGTATCA_-_ATGGCAAATCTAACTAAATCCGCTCAAGGTTCTGCTGCTTCCTCTTCCATGGCCTCCTCTTCTGCCACGACTTCTTGTACTCCTTGGGATCTCTTTATTAATCACCGCGGTGCGGATGGTGAAAAGGCCGCCAGACATCTGTACAGGGGCCTTATTCCCCATGGATTAATGAGAGTCTTTTTCGACAAGGAAGAGATGGAGAAGGGACAAAACATTTCTCGCCAGTTAACAGAGGCTATCGGTGGTGCGTCTGTTCACATTGCAATCTTTTCACCAAGGTATGCCGAATCTTGGTGGTGCCTGGATGAACTTGTGCTGATGGTAGAGTCAGGGAAAGCCAT

Fln Alignment:

AllPineV4_c44053___WDLFINHRGADGEKA-ARHLYRGLIPHGLMRVFFDKEEMEKGQNISRQLTEAIGGASVHIAIFSPRYAESWWCLDELVLMVESGK
B8LQ96_______________YDVFINHRGPDVKKTFASHLYRDLSKYGL-KVFLDDPEMQPGDSLIRQIEGAVGTASVHVAVFSSRYAESRWCLVELLLMLKSGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain