SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45762

Length: 529 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45762
GCAGCGTCCTCGTTGCCTCGTCGTCTCTTAATAACAAGGAACGGGATGCATAATTTGTCACACCAATCATCTGAAATAACCTTCCGCGGAATTGGGATGATGGTTCCCGGTGAATATAGTGGCCAAGATGATGATGATGATGTATTTGGCGTTGTTGATACTGAAAATGCTGTCTTGGAACGCAGTTTCGGGAGTGTGCAAATTCTTTATATGGAAGGTTGTCACCTGGAACCCATTTTGAGGAAGGTAAAGCCACCAAACCTATCATGCCTCGGGTGGAACAGATGTCCTCACTCTTCCCTGCCTTCCTGGGTTCCAGGGAAAAATTTAAGGATTCTATATCTGGAGCAATGCGAACTAAAGGCATTGTGGCACTGGAAAAGTGAATCACAGGAACCTCTGCAGTTTCCGATACATTTGGAGGAGCTGCGGGTAAGACAATGTGAGAAATTGAGAAGCATAACCGGGTTGGAGCGGGCTACAAAGGTCAGATTACTGGATGTTTCTTCATGTTCTCAGTTGGAACATT

Ace file of the UniGene sp_v2.0_unigene45762 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	1.0e-08	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	truncated tir-nbs-lrr protein	-	-	8.55573e-32	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-
Sma3	NB-ARC	IPR002182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMX8

Fln msg: STOP codon was not found. Distance to subject end: 27 aas, your sequence is shorter than subject: 176 - 653

Fln protein: AASSLPRRLLITRNGMHNLSHQSSEITFRGIGMMVPGEYSGQDDDDDVFGVVDTENAVLERSFGSVQILYMEGCHLEPILRKVKPPNLSCLGWNRCPHSSLPSWVPGKNLRILYLEQCELKALWHWKSESQEPLQFPIHLEELRVRQCEKLRSITGLERATKVRLLDVSSCSQLEH

Protein Length: 177

Fln nts: GCAGCGTCCTCGTTGCCTCGTCGTCTCTTAATAACAAGGAACGGGATGCATAATTTGTCACACCAATCATCTGAAATAACCTTCCGCGGAATTGGGATGATGGTTCCCGGTGAATATAGTGGCCAAGATGATGATGATGATGTATTTGGCGTTGTTGATACTGAAAATGCTGTCTTGGAACGCAGTTTCGGGAGTGTGCAAATTCTTTATATGGAAGGTTGTCACCTGGAACCCATTTTGAGGAAGGTAAAGCCACCAAACCTATCATGCCTCGGGTGGAACAGATGTCCTCACTCTTCCCTGCCTTCCTGGGTTCCAGGGAAAAATTTAAGGATTCTATATCTGGAGCAATGCGAACTAAAGGCATTGTGGCACTGGAAAAGTGAATCACAGGAACCTCTGCAGTTTCCGATACATTTGGAGGAGCTGCGGGTAAGACAATGTGAGAAATTGAGAAGCATAACCGGGTTGGAGCGGGCTACAAAGGTCAGATTACTGGATGTTTCTTCATGTTCTCAGTTGGAACATT

Fln Alignment:

AllPineV4_c43921___AASSLPRRLLITRNGMHNLSHQSSEITFRGIGMMVPGEYSGQXXXXXXXXXXDTENAVLERSFGSVQILYMEGCHLEPILRKVKPPNLSCLGWNRCPHSSLPSWVPGKNLRILYLEQCELKALWHWKSESQEPLQFPIHLEELRVRQC
B8LMX8_______________AASSSPLRLWRTENVIEDLLHQSSDITVRGI-RMVHDEYSGYDEDDLFGVID-TENAVLERILRRLQILHIEGSLLERILMKVKLPNLLWFHWEKCPHSSLPAWVPIKNLRVLQVSHRRLNTMSFGEGEPQASLQLPESLEELRVYDC

SSRs (tot: 1)

Start position	End position	Sequence	Length
388	403	CAT CAT CAT CAT CAT C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain